PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_A2C97A02D.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 286aa MW: 31023.3 Da PI: 6.05 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl Traes_5BL_A2C97A02D.3 23 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 77 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.023 | 20 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.34E-17 | 21 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-31 | 22 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-25 | 24 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.0E-24 | 109 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MESGENNMGS NDGPNSKASL PARQRLRWTD ELHEQFVEAV TQLGGPDRAT PKGVLRIMGT 60 PGLTIYHVKS HLQKYRLAKY IPDSSADGNK ADNKDPGDSL AGLDGSSGMQ ISEALKLQME 120 VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRFGGGG IKSETPGAGA TVTVSSDQFP 180 DSERTDPSTP APTSESASQG GAFKRDSGSQ TEAIKSPCHD EPLLTADSNC HPGSPTLSPK 240 HERAAKRQRG SDAEFPEAEL SLPQHIFESS SGPEFQQCSV PYYSGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365733 | 0.0 | AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13. | |||
GenBank | AK373855 | 0.0 | AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180683.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180688.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180697.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180704.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180710.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 2e-90 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A3B6LL03 | 0.0 | A0A3B6LL03_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_A2C97A02D.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-60 | G2-like family protein |
Publications ? help Back to Top | |||
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