PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_9EB8DE389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 25708.1 Da PI: 8.2256 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 5.9e-22 | 28 | 122 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fYn+Y+ e GF+vr+s+ + n +i+ r+fv s+eg ree+++k ++++r +r+ tr+gCkakl+ +++ +g+w v+++ e Traes_5BL_9EB8DE389.1 28 RFYNNYGLEKGFDVRRSYVEWDGSNCHIILRKFVYSREGGREEKRTKrkmEDRKRMPRSITRVGCKAKLVFARQEeTGRWFVKDFIDE 115 5**************************************99999888777788888***************99999************ PP FAR1 85 HnHelap 91 HnH+lap Traes_5BL_9EB8DE389.1 116 HNHPLAP 122 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-19 | 28 | 122 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MADISHESML EYYHIANKMF HSEDEGYRFY NNYGLEKGFD VRRSYVEWDG SNCHIILRKF 60 VYSREGGREE KRTKRKMEDR KRMPRSITRV GCKAKLVFAR QEETGRWFVK DFIDEHNHPL 120 APRDLSCLLR SQRKISDEQK ADIADMEKSG IRKHHIMNIL CMQYGGYDEV GCTTRDIYNF 180 FHANKQESIV SGDAQTVINH MVAWRERDSD LFLHVLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165323.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453HKV6 | 1e-131 | A0A453HKV6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_9EB8DE389.1 | 1e-163 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-27 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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