PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9C32B27E2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 249aa    MW: 27502.6 Da    PI: 4.7583
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9C32B27E2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-192779456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           + +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Traes_5BL_9C32B27E2.1 27 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 79
                           456*************************************************9 PP
2HD-ZIP_I/II122.91.6e-3926117293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ ++L+k++++L +
  Traes_5BL_9C32B27E2.1  26 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLSSYDQLKKDKQALVN 113
                            8*************************************************************************************** PP

            HD-ZIP_I/II  90 elke 93 
                            +l++
  Traes_5BL_9C32B27E2.1 114 QLEK 117
                            9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-192381IPR009057Homeodomain-like
SMARTSM003893.6E-162485IPR001356Homeobox domain
SuperFamilySSF466892.26E-182483IPR009057Homeodomain-like
PROSITE profilePS5007116.7632681IPR001356Homeobox domain
CDDcd000863.21E-172682No hitNo description
PfamPF000467.9E-172779IPR001356Homeobox domain
PRINTSPR000318.3E-65261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000318.3E-66177IPR000047Helix-turn-helix motif
PfamPF021834.0E-1381122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEQGEEDGDW MMEPAAGKKG GVMIDRKKRF SEEQIKSLES MFATQTKLEP RQKLQLAREL  60
GLQPRQVAIW FQNKRARWKS KQLERQYAAL RDDYDALLSS YDQLKKDKQA LVNQLEKLAE  120
MLREPGGAKC GDNAGAAARD DVRLAVAGMS MKDEFVDAGG ASKLYSASEG CGGSGKLSLF  180
GEDDDDAGLF LRPSLQLPTA HDGGFTASGP AEYQQQSPSS FPFHSSWPSS AAEQTCSSSQ  240
WWEFESPSE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243740.0KT224374.1 Triticum aestivum cultivar RAC875 HDZipI-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148448.11e-180homeobox-leucine zipper protein HOX6-like
SwissprotQ651Z52e-95HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH352e-95HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A3B6LR230.0A0A3B6LR23_WHEAT; Uncharacterized protein
TrEMBLA0A446UH090.0A0A446UH09_TRITD; Uncharacterized protein
STRINGTraes_5BL_9C32B27E2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-43homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]