PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_9C1318B2F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 96aa MW: 10117.7 Da PI: 7.7013 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 3 | 47 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E e++ +a + + +W+++a+ +g g+t+ +++ ++ Traes_5BL_9C1318B2F.1 3 AWSESENERFERALDTYDRDtpgRWDRVAAAVGGGKTADDVRRHY 47 7*****************99************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-5 | 1 | 53 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.169 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.13E-11 | 3 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.88E-7 | 3 | 51 | No hit | No description |
Pfam | PF00249 | 1.4E-7 | 3 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-5 | 3 | 52 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MAAWSESENE RFERALDTYD RDTPGRWDRV AAAVGGGKTA DDVRRHYDRL VDDLRRIEAG 60 GANSNGGTHA AGGSSSNGAG NNGSRGGPGS SRRPQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 4 | 62 | 11 | 68 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152537.1 | 1e-42 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-19 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3B6LYN1 | 7e-61 | A0A3B6LYN1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UYB0 | 7e-61 | A0A446UYB0_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_9C1318B2F.1 | 1e-61 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 7e-20 | RAD-like 6 |
Publications ? help Back to Top | |||
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