PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BL_9B80DEC84.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 963aa MW: 106719 Da PI: 9.0296 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.4e-08 | 394 | 438 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q Traes_5BL_9B80DEC84.1 394 NAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 438 68*****************************99**********96 PP | |||||||
2 | Myb_DNA-binding | 43 | 1.1e-13 | 447 | 491 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +r++k l Traes_5BL_9B80DEC84.1 447 RTWTKEEDLQLLAAVQTYGCN-WQLVSANLV-GRIGNQCSNRYRKTL 491 68*****************88.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 43.6 | 6.6e-14 | 499 | 544 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++ +g+W++Ia+ ++ gRt qc +rw+++l Traes_5BL_9B80DEC84.1 499 GRWSEDEDKRLMVSVKLFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 544 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.7 | 8.6e-11 | 551 | 594 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw Traes_5BL_9B80DEC84.1 551 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 594 79*****************88.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.901 | 289 | 387 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.004 | 293 | 389 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-6 | 294 | 326 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00816 | 362 | 386 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-6 | 362 | 407 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.34E-15 | 368 | 436 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.188 | 388 | 440 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.0E-4 | 392 | 442 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-6 | 394 | 438 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-13 | 408 | 448 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-19 | 426 | 491 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.835 | 441 | 495 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-13 | 445 | 493 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-12 | 447 | 490 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.73E-10 | 448 | 491 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-15 | 449 | 491 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.557 | 493 | 544 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 494 | 547 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-24 | 495 | 592 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 497 | 546 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-10 | 500 | 544 | No hit | No description |
Pfam | PF13921 | 4.6E-14 | 501 | 561 | No hit | No description |
PROSITE profile | PS51294 | 17.042 | 545 | 600 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-15 | 548 | 599 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-10 | 549 | 598 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.14E-9 | 552 | 595 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 963 aa Download sequence Send to blast |
MDFYSDDDSD PDFDEGLQED LDLVRRSCII AGADPDAAVA QASSYLAVPS ATTTAAAAAA 60 AARDGSSDEG EGEEEDEDLA LVRSIRENLH LNKASPSSPR PICAWPPSDA EDDEEDDLET 120 LRAIQRRFSH YHSGTSTGPL ENMKNEASKG GNDEFIAHRP GEEDAQKKNM NANTQTGFPK 180 AALLLVDALK KNRACQKFIR RKMINIEAKI EVNKDLRDRV KCLMDYQYSC RRSFGKVLCQ 240 KVDPRVRLIS SQKQSAQSAK NKYKMPALLL GPAENPHVEK YKAVLKQFPV SLQKHPWSDI 300 EKDRLAKGIK QQYQEALIKD SMKNGSSSGD FSAVDMAYAL TNTVGNFEAT PEILRSVLPL 360 VNWDFIAAMY LPGRSGAECE SRWLNHDDPL INHNAWTACE EKRLILTVQE KGMHNWINIA 420 VALGTQRTPF QCLARYQRSL NPHILKRTWT KEEDLQLLAA VQTYGCNWQL VSANLVGRIG 480 NQCSNRYRKT LIPERKRVGR WSEDEDKRLM VSVKLFRSGS WNKIAQFVPG RTQSQCSERW 540 RNVLDPDIEH GEWRPEEDSK LLASVHEVGP CWSKIAGAMI PHRTDNMCLR RWKRLCQDEL 600 PLMIAANQVK KSIFQTNFVD RETERPAICP SDFPSLVYSK VDKGDENTVS DQVKKPRKRS 660 RKSSVDNVPP NDPSKSSADA AAVNTTKRKS RKKLSGIGAE NQTGEDITVS DGVNNSSRGH 720 SRARKRKVTT DGDVVVQTRM RGSISVDNEL TLDILGGPIS FDDEAPTNQK RDPTSVGKEG 780 TAKKRTRGSV SVGNEGPVKK KMRGSISVGD GRAVKNRMRG SVSIDNQGNT TKRKRVSRKS 840 AKGNSKTDGE VNTCEMDLPS VPSEAAAERG IDTGNTNKMK RKSTPRPKLI NMAEGTVDEY 900 SRLADCISFA RGNGTSKNNS VMPINNAMQS GGPSGENLQV AISARLDPTS IENGSSPNTQ 960 VVD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-23 | 362 | 617 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-23 | 362 | 617 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 653 | 661 | KKPRKRSRK |
2 | 781 | 787 | AKKRTRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 0.0 | uncharacterized protein LOC109736068 | ||||
TrEMBL | A0A3B6LNG4 | 0.0 | A0A3B6LNG4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_9B80DEC84.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-142 | myb domain protein 4r1 |
Publications ? help Back to Top | |||
---|---|---|---|
|