PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_98A6A7CC2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 54aa MW: 6077.98 Da PI: 8.2199 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 rg+W++eEd l+ ++++ G+g +W + ++++g Traes_5BL_98A6A7CC2.1 14 RGPWSPEEDAMLKAYIEERGTGnNWIALPHKIG 46 89*********************8888887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-6 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.412 | 9 | 54 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-10 | 12 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-6 | 14 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.05E-4 | 16 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 54 aa Download sequence Send to blast |
MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGNYLP MWSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188367.1 | 2e-26 | transcription factor MYB36-like | ||||
Swissprot | Q9M2Y9 | 5e-22 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A3B5ZVR4 | 6e-26 | A0A3B5ZVR4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446J2B2 | 7e-26 | A0A446J2B2_TRITD; Uncharacterized protein | ||||
TrEMBL | R7W7Q4 | 8e-26 | R7W7Q4_AEGTA; Transcription factor RAX3 | ||||
STRING | Traes_5BL_98A6A7CC2.1 | 1e-33 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-24 | myb domain protein 84 |
Publications ? help Back to Top | |||
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