PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9627436AE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 29060 Da    PI: 8.9985
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9627436AE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Traes_5BL_9627436AE.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                           79***********************************************96 PP

2K-box100.32.8e-33851769100
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            +e++  +s+++e+ kLk+++enLqr+qR+llGedL+sL +k+L+qLe+qL++sl++iRs++++++l+q+ +lq+ke++l e+n++Lr+
  Traes_5BL_9627436AE.1  85 KENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGSLGIKDLEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRKEQMLCEANRCLRR 172
                            46667899******************************************************************************** PP

                  K-box  97 klee 100
                            klee
  Traes_5BL_9627436AE.1 173 KLEE 176
                            *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
CDDcd002651.31E-45277No hitNo description
SuperFamilySSF554551.29E-33288IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2687174IPR002487Transcription factor, K-box
PROSITE profilePS5129715.49990180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG  60
QSMPKTLERY QKCSYGGPDT AVQNKENELV QSSRNEYLKL KARVENLQRT QRNLLGEDLG  120
SLGIKDLEQL EKQLDSSLRH IRSTRTQHML DQLTDLQRKE QMLCEANRCL RRKLEESSQQ  180
MQGQMWEQHA ANLLGYDQLR QSPHQQQATH HGGNGFFHPL DPTTEPTLQI GYTQEQINNA  240
CVAASFMPTW LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-32751741101Developmental protein SEPALLATA 3
4ox0_B2e-32751741101Developmental protein SEPALLATA 3
4ox0_C2e-32751741101Developmental protein SEPALLATA 3
4ox0_D2e-32751741101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028750.0AM502875.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM10A (WM10A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178163.10.0MADS-box transcription factor 8-like
SwissprotQ9SAR11e-156MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBLA0A3B6LQ000.0A0A3B6LQ00_WHEAT; Uncharacterized protein
TrEMBLA0A446UF770.0A0A446UF77_TRITD; Uncharacterized protein
STRINGTraes_5BL_9627436AE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34833469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.14e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jang YH, et al.
    Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.
    Plant Cell Physiol., 2009. 50(8): p. 1479-92
    [PMID:19561057]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  5. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]