PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_93F0F3F5D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 159aa MW: 16428.1 Da PI: 5.7448 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.1 | 3.6e-32 | 67 | 119 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +rY+eClkNhA+s+GghavDGCgEf+++ geeg+++al+CaAC+CHRnFHRre+ Traes_5BL_93F0F3F5D.1 67 ARYRECLKNHAVSIGGHAVDGCGEFIAA-GEEGSIDALRCAACNCHRNFHRRES 119 79*************************9.999********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-29 | 67 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 68 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.3E-30 | 68 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.699 | 69 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MDFDDHDDGD EEMQMSMPMP VSSSYEPPPP LSTGFGGAGV APNKPPGGGG GGGGELGGRA 60 KAPGGGARYR ECLKNHAVSI GGHAVDGCGE FIAAGEEGSI DALRCAACNC HRNFHRRESD 120 FPAGGEGSPF SPTAMVPYGG VPHHQFSPYY RTPAGYLHH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165793.1 | 3e-90 | zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 5e-64 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A3B6LNA2 | 1e-111 | A0A3B6LNA2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UC86 | 1e-111 | A0A446UC86_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_93F0F3F5D.1 | 1e-111 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-27 | homeobox protein 21 |
Publications ? help Back to Top | |||
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