PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_938BFB459.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 670aa MW: 76136 Da PI: 7.6732 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 128 | 147 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++t C++G rC++ H Traes_5BL_938BFB459.2 128 CPFYLKTAACRFGVRCSRVH 147 ******************99 PP | |||||||
2 | zf-CCCH | 24.3 | 5.3e-08 | 257 | 284 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++r+ tC++G C+F+H+ Traes_5BL_938BFB459.2 257 WKSAICGEYMRSRfkTCSHGVACNFIHC 284 7999***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.131 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8 | 123 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.3E-37 | 128 | 147 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 3.3E-37 | 147 | 167 | IPR009145 | U2 auxiliary factor small subunit |
Gene3D | G3DSA:3.30.70.330 | 1.5E-25 | 153 | 252 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 9.917 | 154 | 254 | IPR000504 | RNA recognition motif domain |
CDD | cd12540 | 9.23E-50 | 155 | 252 | No hit | No description |
SMART | SM00361 | 7.7E-6 | 176 | 250 | IPR003954 | RNA recognition motif domain, eukaryote |
PRINTS | PR01848 | 3.3E-37 | 183 | 198 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 1.09E-16 | 185 | 252 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.3E-37 | 211 | 233 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 3.3E-37 | 238 | 262 | IPR009145 | U2 auxiliary factor small subunit |
SMART | SM00356 | 0.02 | 256 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.314 | 256 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.3E-37 | 276 | 288 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
AASRAAEEAA AEEEARAAEA SARDKYNDDH RDETEDDGEW EYIEDGPAEI IWQGNEIIVK 60 KKKIKIPKKA EDKPLSQEEE RPTSNPLPPQ SVAVASQRRE PSLSARELLE KVAQETPNFG 120 TEQDKAHCPF YLKTAACRFG VRCSRVHFYP DKSCTLLMKN MYNGPGLVLE QDEGLEFTDE 180 EIEQSYEEFY EDVHTEFLKF GELVNFKVCR NGSFHLRGNV YVHYKALDSA LLAYNSMNGR 240 YFAGKQITCE FVALTKWKSA ICGEYMRSRF KTCSHGVACN FIHCFRNPGG DYEWADWDNP 300 PPKYWTRKMA ALFGPSDDAV FDKASDTPDF ERLHSSDRKR LRSSDDRYIS SRHGDGGAHK 360 RHSSRVFSHS KQEQSNHIMK HGHTRHRREA SAANEQRGQE IEDDTGRYCS PMENERVSQA 420 HKHEEKHRDG HGDVARGYNG KIKSRKHRSE RHESLESGCS DWPSEFADAG TSRSPSGSKS 480 TNRYNDHKRN RRQSSDDPNL ERGYSAADKS SGKAHIAKSS SRHYVEDDSC GEKGSGRGKS 540 GKHSDHCDDP DDRWLATNSD VDSDAETRFP RSSSGVGKGG RNDNAPPDED DRYRRSSSRS 600 GRSRAKDDKS SRKRKKRHSE IRKNSDSDDD PSDSSDVRDL SLHARRSRSR SSEEGLSLHK 660 RRKGRRGHDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 1e-32 | 119 | 283 | 9 | 167 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 611 | 615 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361818 | 0.0 | AK361818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1150D09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147330.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
Swissprot | Q6YVX9 | 0.0 | C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A3B6LT29 | 0.0 | A0A3B6LT29_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_938BFB459.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9296 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-137 | C3H family protein |
Publications ? help Back to Top | |||
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