PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_92902F993.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CAMTA
Protein Properties Length: 835aa    MW: 93538.6 Da    PI: 6.4814
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_92902F993.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11673e-5261223118
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            ke ++rwl+++ei++iL+n+++++++ e+++ p sgsl+L++rk++r frkDG++w+kkk+g tv+E+he+L  g+++vl+cyYah+e
  Traes_5BL_92902F993.1   6 KEaQTRWLRPTEICEILKNYRNFHIAPEPPNMPASGSLFLFDRKVLRLFRKDGHNWRKKKNGTTVKEAHERLTSGSIDVLHCYYAHGE 93 
                            5559************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                            +n +fqrr+yw+Lee++ +ivlvhylevk
  Traes_5BL_92902F993.1  94 DNINFQRRSYWMLEEDYMHIVLVHYLEVK 122
                            **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.8591127IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-694122IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-467121IPR005559CG-1 DNA-binding domain
CDDcd001027.03E-6258345No hitNo description
Gene3DG3DSA:2.60.40.101.6E-7258345IPR013783Immunoglobulin-like fold
PfamPF018331.4E-7258343IPR002909IPT domain
SuperFamilySSF812962.68E-18259344IPR014756Immunoglobulin E-set
SuperFamilySSF484038.24E-18453558IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-18453559IPR020683Ankyrin repeat-containing domain
CDDcd002049.26E-15453554No hitNo description
PROSITE profilePS5029718.643453556IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.71462494IPR002110Ankyrin repeat
SMARTSM002480.013495524IPR002110Ankyrin repeat
PROSITE profilePS500888.736495527IPR002110Ankyrin repeat
SMARTSM002481500534563IPR002110Ankyrin repeat
SuperFamilySSF525401.14E-6665718IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24668690IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206669698IPR000048IQ motif, EF-hand binding site
PfamPF006120.025670689IPR000048IQ motif, EF-hand binding site
SMARTSM000150.55691713IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151692716IPR000048IQ motif, EF-hand binding site
PfamPF006120.0059694713IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MEQILKEAQT RWLRPTEICE ILKNYRNFHI APEPPNMPAS GSLFLFDRKV LRLFRKDGHN  60
WRKKKNGTTV KEAHERLTSG SIDVLHCYYA HGEDNINFQR RSYWMLEEDY MHIVLVHYLE  120
VKLPSGNDGT STECLQLPSA IDGTTTEFQL PSATDSTFAT VDSFEQNNKL LGEAINFPVL  180
KTQSSNLSDM LKDSFKRSDS FARWMSKELA EVDDSQVKSS SGLYRNSEDA DNIIGASRHD  240
QLDWFTLDPM VAQDQLFSIT EFFPSWTYAG SKTRVLVTGS FLTSDKVIKL KWSCMFGEVE  300
VPADILAGGT LRCYSPPHKP GRVPFYVTCS NKLACSEVRE FEYRPSDSQY MDAPSPHGAT  360
NKIYLQARLD ELLSLGQDEQ DKFQAALSGP KKELIDLNKK ITSLMTDNDP WSELLKFADD  420
NQLAPDDRQD QFVESSIKEK LHIWLLHKAG GGGKDPSVLD EEGQGVLHLA AALGYDWVIR  480
PTITAGVSIN FRDVHGWTAL HWAAFCGRER TVVALIALGA APGALTDPRP DFPSGRTPAD  540
LASFNGHKGI SGFLAEFSLT SHLQTLNLKE AMGSNASEIS GLPGIGDVTG RIASPSAGQG  600
LQAGLMGDSL GAVRNAAQAA ARIFQVFRVQ SFQRKQAVQY EDDNGVISYE RAMSLLSYKP  660
SKPGQFDPMH AAAARIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVSK HYRKIIWSIG  720
IMENVILRWR QQGAGLRGFR STEGATDSST SSSSVDVIPV KPAEDDYNFL QDGRKQAEER  780
LQRALARVKS MVRYPEARDQ DQRILTVVTK MQESQLVEET LLEESTEMDE GFFDE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652100.0AK365210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179695.10.0calmodulin-binding transcription activator 3-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A3B6LXE90.0A0A3B6LXE9_WHEAT; Uncharacterized protein
STRINGTraes_5BL_92902F993.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-180Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]