PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_8D23DFA4A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 353aa    MW: 39722.6 Da    PI: 5.6821
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_8D23DFA4A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35451362102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+y++++d++++ ++sw++++nsfvv+d++ fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  Traes_5BL_8D23DFA4A.1  45 FLAKTYDMVDDPATDAVVSWTATSNSFVVWDPHLFATLLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 123
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll++ikr+k 
  Traes_5BL_8D23DFA4A.1 124 QRHLLRNIKRRKP 136
                            ***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.9E-6141134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3841134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3641134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSHRMMMSPV KVEGRRCPDP DPAAAAGGGA PRPMDGLGDA GPTPFLAKTY DMVDDPATDA  60
VVSWTATSNS FVVWDPHLFA TLLLPRYFKH SNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQRHLLRN IKRRKPTHGS QNQQSLGSYL EVGNFGHDVE IDHLKRDKQL LMAEVVKLRQ  180
EQQNTRSDLQ AMEKRLQGTE QKQQQMMSFL ARVMQNPMFI RQLISQSEMR KELEDAISNK  240
RRRRIDQGPE AVDGMGTGST LEQGSQVMFE KQEPVDSLVN GVISDLESSS VDTKGAEVQQ  300
SVASSRSEQL RGRPSGELND DFWEDLLHEG GLGEEASNLV VPDDMNLLAQ KMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-272813410129Heat shock factor protein 1
5d5v_B7e-272813410129Heat shock factor protein 1
5d5v_D7e-272813410129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581480.0AK358148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187328.10.0heat stress transcription factor A-2e-like
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A3B6LV230.0A0A3B6LV23_WHEAT; Uncharacterized protein
TrEMBLA0A446UQT40.0A0A446UQT4_TRITD; Uncharacterized protein
STRINGTraes_5BL_8D23DFA4A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-96heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]