PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_8C181ECA8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 269aa    MW: 29511.1 Da    PI: 4.8262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_8C181ECA8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-0886133455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i  ++  L++l+P +    +k   Ka +L + ++Y++sLq
  Traes_5BL_8C181ECA8.2  86 SHSLAERVRREKITLKMKMLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 133
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1680151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-980137No hitNo description
PROSITE profilePS5088814.68482132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1782149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-686133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-988138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTPEFGLQMG EPTGPDSKKC KIEDETVRPK VEEEAATATA SDGSAGGERG RKQAKGKGSK  60
SKQPAADEPP RDYVHVRARR GQATDSHSLA ERVRREKITL KMKMLQDLVP GCNKVIGKAL  120
MLDEIINYVQ SLQQQVEFLS MKLSTVNPQL DFDTLSNLLH KDMNQALGPS ASTVFPLESA  180
GTVYPLCDQA DLYQSFSSGA MENQCSMGLL DMALPPAPQY PFQKQQQDFW EAGAQNGLHM  240
DHEQSQENAG SAPNFDGQLQ AADHPEIEF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635170.0AK363517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195706.10.0transcription factor bHLH49-like isoform X1
SwissprotQ9CAA92e-51BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A446UEW90.0A0A446UEW9_TRITD; Uncharacterized protein
STRINGTraes_5BL_8C181ECA8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]