PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_8BAA498F1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 403aa MW: 47395.3 Da PI: 8.7235 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.7 | 3.3e-07 | 2 | 35 | 57 | 91 |
FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++r++Cka +k+kk+ ++w +k+ leHnH+l+p Traes_5BL_8BAA498F1.1 2 SKRVNCKAAVKMKKK-GKEWIYEKVLLEHNHTLNP 35 79************9.9***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-4 | 2 | 35 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.8E-32 | 156 | 248 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MSKRVNCKAA VKMKKKGKEW IYEKVLLEHN HTLNPEPWEL KHMHSHKNKD PAIMEFLDDL 60 QMCDVSPNAT MNVLTKMHGN RENMPWSERD LQNRKAENVR KERADDVKKL KAFFNECRAQ 120 NSKFYYDIEH DSEGAPKNIF WSHASCQANY AEFGDVVTFD TTYKCNFYNK PLAMFVGSNH 180 HLQNVIFGFA LLGDEKEETF DWVFRTFKMC MENKEPHCIL TDQDQAMANA LPGVFPNTIH 240 RLCRWHVLHG HKDSLKVLYN LYDGLKEKLL TIINHPLTPM EFEKAWMEMV NEYGLESDPT 300 IGSLYDLRTR WIAAYFKDVY CGKMTSTQRS ESTNRIVKRN HINPTTPLHV FARKMFQVLQ 360 GRKEAEARVT MESQARPKTV TNYPLEHQLS RIYTHAVFRK YKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164017.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020164018.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020164019.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A452ZUL9 | 0.0 | A0A452ZUL9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A452ZUN0 | 0.0 | A0A452ZUN0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_8BAA498F1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-63 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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