PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_7F84602F3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 388aa    MW: 41796.7 Da    PI: 4.7535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_7F84602F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20126175255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+G+r+++ +g+W+AeIrdps+     r++lg+++taeeAa+a++a ++k++g
  Traes_5BL_7F84602F3.1 126 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 175
                            69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32126185IPR001471AP2/ERF domain
SMARTSM003807.1E-39126189IPR001471AP2/ERF domain
PROSITE profilePS5103224.184126183IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22126184IPR016177DNA-binding domain
CDDcd000188.81E-33126184No hitNo description
PfamPF008472.3E-12127175IPR001471AP2/ERF domain
PRINTSPR003671.2E-11127138IPR001471AP2/ERF domain
PRINTSPR003671.2E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MCGGAILAGF IPPSAAAAAA KAAAAKKQQQ QQQQQQRSVT ADSLWPGLRK KPAEEEDFEA  60
DFRDFERDSN DDDDAVEEVP PPPATAGFAF AAAAEVALPA PTRLGPDAIQ HDGPAAKSVK  120
RVRKNQYRGI RQRPWGKWAA EIRDPSKGVR VWLGTYDTAE EAARAYDAEA RKIRGKKAKV  180
NFPEEAPTVQ KSTLKPTAVK SAKLAPPPKT CEDEPFNHLS RGDNDLFAMF AFNDKKVSAK  240
PAESVDSLLP VKPLVPTETF GMNMLSDQSS NSFGSTDFGW DDEAMTPDYT SVFVPNAAAM  300
PAYGEPAYLQ GGAPKRMRNN FGVAVLPQGN GAQDIPAFDH EMKYSLPYVE SSSDGSMDSL  360
LLNGAMQDGA SSGDLWSLDE LFMAAGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20126183260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20126183563ATERF1
3gcc_A5e-20126183563ATERF1
5wx9_A5e-201261851474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090270.0BT009027.1 Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194933.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A446UA960.0A0A446UA96_TRITD; Uncharacterized protein
STRINGTraes_5BL_7F84602F3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-32related to AP2 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]