PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_71FC575B0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 472aa    MW: 53412.7 Da    PI: 6.9512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_71FC575B0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-121353445
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                           W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
  Traes_5BL_71FC575B0.1 13 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIEHYT 53
                           *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250243.2E-1451468IPR016827Transcriptional adaptor 2
SuperFamilySSF466899.72E-13659IPR009057Homeodomain-like
PROSITE profilePS5129322.742860IPR017884SANT domain
SMARTSM007174.1E-11958IPR001005SANT/Myb domain
PfamPF002495.2E-121253IPR001005SANT/Myb domain
CDDcd001671.99E-111354No hitNo description
Gene3DG3DSA:1.10.10.601.1E-81355IPR009057Homeodomain-like
SuperFamilySSF466895.73E-22371461IPR009057Homeodomain-like
PROSITE profilePS5093410.105381472IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDNLSFPLIC PDWNADEEIL LLEGIEMYGL GNWAEVAEHV GTKSKAQCIE HYTTAYMNSP  60
CYPLPDMSHV NGKNRKELLA MAKVQGESKK GIPLLSGDLT PKAESPFSPS RVKMEDALGE  120
GPASRSPSHI PGGANKKAST VGHFKDSANL SKVEDGHMDR SIGVKKPRYS ADEGPSLTEL  180
SGYNAKRHEF DPEYDNDAEQ ALAEMEFKET DSETDRELKL RVLRIYLSRL DERKRRKEFI  240
LERNLLYPNP LEKDLTNEDK EVYHRYKVFM RFLSKEEHEA LVRSVIEERK IRRRIQELQE  300
CRSAGCRTLA EAKIHIEQKR RKEYEANALK AKESGQLISN SKSGHKTNRP MKVETDGSLD  360
LKKGSAILDA GGRDSPKSTG PTSAKQWDDW DIVGLPGAEL LSASEKLLCC QNRLLPSHYL  420
RMQEVLMQEM FKGNVIKKED ARVLFKVDPT KVDTVYDMVT KKLGNNEEAP MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E7e-1956857120Transcriptional adapter 2
6cw3_G7e-1956857120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3662460.0AK366246.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149065.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A3B6LTC10.0A0A3B6LTC1_WHEAT; Transcriptional adapter
STRINGTraes_5BL_71FC575B0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]