PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_71717F042.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 424aa MW: 44432.4 Da PI: 6.8005

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_71717F042.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	245	293	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Traes_5BL_71717F042.1 245 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 293 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-17	240	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-11	240	297	No hit	No description
PROSITE profile	PS50888	15.65	242	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	243	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-7	245	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	248	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGFSAHQ HQQHPHMMDS FGSGMWSAAS 60 QHGAGFLAPV PGFLPPPGLG GHFPVDSGFI ERAARSSCFV GPGAGGGMMG AGAFGGAGDQ 120 QMGSAFGEGY LDHRRKEGGD KAEPELAGSG GVPSSEAAGG DCSSKGSDSK KRRRPSEVMG 180 GDQVQSSNVA ADSANESAQS KDKGEESSPA TGTTTGGKSK GKGAKESSEK EDYIHVRARR 240 GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS 300 MKLATVNPRL DLNIEGLLSK DLLRFPGVSS SSMGFSPEMM HPQLQLSQPG LMQGGAAAMA 360 NSDVFRRIMQ AQLGAKDGSH SQMAHALNGP FSDHVAQMAY PSMGSSHSHS QDLSIRPSQD 420 AYQM

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGFSAHQ HQQHPHMMDS FGSGMWSAAS  60
QHGAGFLAPV PGFLPPPGLG GHFPVDSGFI ERAARSSCFV GPGAGGGMMG AGAFGGAGDQ  120
QMGSAFGEGY LDHRRKEGGD KAEPELAGSG GVPSSEAAGG DCSSKGSDSK KRRRPSEVMG  180
GDQVQSSNVA ADSANESAQS KDKGEESSPA TGTTTGGKSK GKGAKESSEK EDYIHVRARR  240
GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS  300
MKLATVNPRL DLNIEGLLSK DLLRFPGVSS SSMGFSPEMM HPQLQLSQPG LMQGGAAAMA  360
NSDVFRRIMQ AQLGAKDGSH SQMAHALNGP FSDHVAQMAY PSMGSSHSHS QDLSIRPSQD  420
AYQM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362778	0.0	AK362778.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010A07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150009.1	0.0	transcription factor bHLH49-like
Swissprot	Q9CAA9	4e-66	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3B6LLX8	0.0	A0A3B6LLX8_WHEAT; Uncharacterized protein
TrEMBL	A0A446UCK3	0.0	A0A446UCK3_TRITD; Uncharacterized protein
STRING	Traes_5BL_71717F042.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]