PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_700283665.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 557aa    MW: 61831 Da    PI: 6.1987
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_700283665.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.83.4e-1301875561373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++++++c +av+++d+ +++ l+++l +l+s +gdpmqRl ay++e+L arl+ s+s+lyk+l+++e +   sse +++++l+ e++
  Traes_5BL_700283665.2 187 LKQVIIACGKAVAANDMYATELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSFSGSKLYKSLKCKEPT---SSELMSYMHLLCEIC 271
                            57899****************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI ea++ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL+++ +++g+
  Traes_5BL_700283665.2 272 PFYKFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITIIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDMVGTRLHSVSASCGL 359
                            *************************************************************988899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfefn+ ++ + +++ +++L+++pgEa++Vn+++qlh+++desvs+e++rd++++++kslsP+vv++veqe+++n++ Fl r le+l+
  Traes_5BL_700283665.2 360 PFEFNA-IHAASHEVYIQHLDIRPGEAIVVNFAYQLHHTPDESVSMENHRDRIVRMIKSLSPRVVTLVEQESNTNTSAFLPRYLETLD 446
                            ******.688899999************************************************************************ PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+s+++ lpr+++ ri+ E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++k+ll  ++s  yr
  Traes_5BL_700283665.2 447 YYTAMFESIDVALPRDDKRRISTEQHCVARDIVNLIACEGAERVERHEVFGKWKARFAMAGFRPYPLSSVVNNTIKTLLDSYHSC-YR 533
                            ***********************************************************************************55.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                            +ee++g l+lgWk+r Lv+ SaW
  Traes_5BL_700283665.2 534 LEERDGVLYLGWKSRVLVVSSAW 556
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.969161538IPR005202Transcription factor GRAS
PfamPF035141.2E-127187556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MINFILSLSH KVAITSMSAK ASERTYRCSD DSQMAYYNNS VPLAENGRFY MMQNHLDVHY  60
TSSGDGSQKI SSNPQVFEAQ YCTLESSSAN GVYPTQSSTS SHSISPISGS PLSQNDSHSY  120
HTYDSPPTAS CVTEIPDFQS KLKELENAIL GPELDIAFDS PESLLQANHP LKQDNWRQLL  180
GINTGDLKQV IIACGKAVAA NDMYATELLI SELGQLVSVS GDPMQRLGAY MLEGLVARLS  240
FSGSKLYKSL KCKEPTSSEL MSYMHLLCEI CPFYKFGYMS ANGAIAEAIK GENFVHIIDF  300
QIAQGSQWIT IIQALAARPG GPPFLRITGI DDSNSAYARG GGLDMVGTRL HSVSASCGLP  360
FEFNAIHAAS HEVYIQHLDI RPGEAIVVNF AYQLHHTPDE SVSMENHRDR IVRMIKSLSP  420
RVVTLVEQES NTNTSAFLPR YLETLDYYTA MFESIDVALP RDDKRRISTE QHCVARDIVN  480
LIACEGAERV ERHEVFGKWK ARFAMAGFRP YPLSSVVNNT IKTLLDSYHS CYRLEERDGV  540
LYLGWKSRVL VVSSAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-591895566374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180371.10.0scarecrow-like protein 21
RefseqXP_020180372.10.0scarecrow-like protein 21
RefseqXP_020180373.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A446UNT10.0A0A446UNT1_TRITD; Uncharacterized protein
STRINGTraes_5BL_700283665.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]