PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_692FEF87A.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 300aa    MW: 33345.4 Da    PI: 4.7609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_692FEF87A.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-09555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT eE+  l  +++++G g+W++I +          R+  ++k++w++
  Traes_5BL_692FEF87A.3  5 KQKWTSEEEAALRAGIARYGVGSWRLILKDKDfssilSCRSNVDLKDKWRN 55
                           79*******************************9**9889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.733161IPR017930Myb domain
SuperFamilySSF466893.12E-14258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-12356IPR009057Homeodomain-like
SMARTSM007175.5E-5459IPR001005SANT/Myb domain
PfamPF002494.4E-7555IPR001005SANT/Myb domain
CDDcd116608.16E-18657No hitNo description
SuperFamilySSF467852.83E-12119191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.1E-5120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.6E-14121191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.131122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.1E-7127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGARKQKWTS EEEAALRAGI ARYGVGSWRL ILKDKDFSSI LSCRSNVDLK DKWRNINVFF  60
TESGSMDKER TATKKNRAAP RRNDHPMANS IVASDVDDEI VDEQPIASMS SELWNVSIPK  120
KSRSRLNNII LESVKNLNEP TGSHSTTIAK YIEEEYWPPS EFDRILSANL KDLTTSGELI  180
EVNRKYRIAP APGSMYSEGR SPETLLLEDM QREPQKIESD EIKTPTKSQV DFELADMITM  240
TAKEAASAAA RAIAEAEALM AEAEAATREA EAAEADAQAA QAFAEAVRNR NVTELIMAQS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519300.0JF951930.1 Triticum aestivum clone TaMYB47 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152791.11e-170single myb histone 5-like
SwissprotC0HIA31e-108SMH6_MAIZE; Single myb histone 6
TrEMBLG9DR930.0G9DR93_WHEAT; MYB-related protein
STRINGTraes_5BL_692FEF87A.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-55telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Zhang L,Zhao G,Jia J,Liu X,Kong X
    Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress.
    J. Exp. Bot., 2012. 63(1): p. 203-14
    [PMID:21934119]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]