PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_6888AE9CB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 408aa    MW: 44115.2 Da    PI: 6.8639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_6888AE9CB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05242261120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++Cp C k+F+r  n++ H+
  Traes_5BL_6888AE9CB.1 242 FSCPVCFKTFNRYNNMQMHM 261
                            89*****************9 PP
2zf-C2H2110.0013328348323
                            ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                            C  Cgk F  k + ++H +++
  Traes_5BL_6888AE9CB.1 328 CRRCGKAFAVKGDWRTHEKNC 348
                            *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-6242261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-6308346No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5313346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538326346IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MENPYTTFLK NYHQRRYYFS PTLVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPPSPPL  60
REALPLLSLA PASRRSRERR FGPGKDDSDD GDEEDGEEGK QAPGSAASSS LHHNQKLAGR  120
QLFADLNSKA TDDPMDSEAG GAAGDVTVAL HIGLPSAGTA ADLISGISAA DRAARDEEEE  180
EDDRVSRELS GGGAEGDGDE DGENEAAVAP VLGFSSTPIG RLNKGQYWIP TPTQILIGPT  240
QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP TAMLRLPCYC CAPGCRNNVD  300
HPRAKPLKDF RTLQTHYKRK HGLKPFLCRR CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF  360
KHKRSLKDHA RAFGQGHGTL GGAGLDDDDD CAISDVEHDG AAAAARSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180661.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-123ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3B6LP540.0A0A3B6LP54_WHEAT; Uncharacterized protein
TrEMBLA0A446UDH70.0A0A446UDH7_TRITD; Uncharacterized protein
STRINGTraes_5BL_6888AE9CB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]