PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_60FC12DA6.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 307aa MW: 31694.9 Da PI: 6.4032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 152 | 201 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+ ae Aa+a++aa++ ++g Traes_5BL_60FC12DA6.2 152 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDDAEAAARAYDAAALGFRG 201 8********.**********7.....337**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.85E-17 | 151 | 211 | No hit | No description |
SuperFamily | SSF54171 | 4.9E-22 | 152 | 211 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.9E-12 | 152 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-32 | 152 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.987 | 152 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-34 | 152 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 153 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 175 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MCCGAEVADP GEHRRRLAAG DDDGGDGREE HALSPPPLNT TMWGRRQAQE MSAMVSALAQ 60 VVAGGVGEGV MASSTKRPAE HEAFAEEAWW STSYGGGDGD GGAPSAASSF LADYTAAPAA 120 SYSPHGAAAG DEELPSPSSA ESGGSGGTPR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG 180 TFDDAEAAAR AYDAAALGFR GSRAKLNFPE SATIPPPQQP PHAPALAMPP PQQPPALLGG 240 QAYSHYARFL RPSTGGSTSG APRTPAPPLI YSFGAGASYP LQPERRGEGA STERPAPVVT 300 SAAAWAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 151 | 209 | 4 | 63 | ATERF1 |
3gcc_A | 5e-21 | 151 | 209 | 4 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362061 | 0.0 | AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238677.2 | 2e-72 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A446U1H5 | 1e-147 | A0A446U1H5_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_60FC12DA6.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 7e-24 | related to AP2 6 |
Publications ? help Back to Top | |||
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