PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_60510E4A7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 234aa    MW: 25253.6 Da    PI: 4.7867
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_60510E4A7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-174799155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr++ + grWv+e+r+p ++g   r +lg++  ae Aa+a++aa+++l g
  Traes_5BL_60510E4A7.1 47 PVYRGVRRRGSAGRWVCEVRVPGKRG--ERLWLGTYVAAESAARAHDAAMLALLG 99
                           68*******************95544..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-124799IPR001471AP2/ERF domain
PROSITE profilePS5103220.69248111IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1648113IPR016177DNA-binding domain
SMARTSM003801.4E-1648117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-2648113IPR001471AP2/ERF domain
CDDcd000183.37E-2049113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDMGINGWIS SPSSSTSGHE LGETVPVWSP AAKRPAGRTK FKETRHPVYR GVRRRGSAGR  60
WVCEVRVPGK RGERLWLGTY VAAESAARAH DAAMLALLGR SPCAAACLNF PDSAWLLVMP  120
PRLSDLADVR RTAIQAVASF LRLEAATVVP DVDEATSPVY LPSLVDNADE VFQVPTFSPL  180
GSDMFELDMS GEMDLDAYYA GFAQGMLLEP PPMPSYWENG ECGDGGAAAG LWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0287670.0EF028767.1 Triticum aestivum CBFIIId-B19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167751.11e-157dehydration-responsive element-binding protein 1H-like
SwissprotA2Z3891e-56DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0MPK51e-169A0MPK5_WHEAT; CBFIIId-B19
STRINGTraes_5BL_60510E4A7.11e-170(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-28C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Badawi M,Danyluk J,Boucho B,Houde M,Sarhan F
    The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs.
    Mol. Genet. Genomics, 2007. 277(5): p. 533-54
    [PMID:17285309]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]