PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_59AFA4B01.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27422.7 Da PI: 9.8981 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.9 | 8.7e-49 | 70 | 197 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp GfrFhPt+e++++ y +kv + ++ + +i evd++k eP +Lpkk+k +ekewyf++++d+ky g r+nratk+gyWkatgk Traes_5BL_59AFA4B01.1 70 LPSGFRFHPTEEDIITSYPVPKVLNPTFIA-IAIGEVDLNKNEPYELPKKAKMGEKEWYFYCQKDRKYLMGIRTNRATKAGYWKATGK 156 699**********************99777.78***************99999*********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ + +l+g+kktLvfykgrap+gekt+Wvmheyrle Traes_5BL_59AFA4B01.1 157 DKEIFHPTPTLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 197 ***************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-52 | 61 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.999 | 70 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 71 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
GFYGKCLADT RILSYLSASS CIPSSLYSFH SCLHLYDRLP YLCHPINHCP ESLLHERPPS 60 SSTTAPTLEL PSGFRFHPTE EDIITSYPVP KVLNPTFIAI AIGEVDLNKN EPYELPKKAK 120 MGEKEWYFYC QKDRKYLMGI RTNRATKAGY WKATGKDKEI FHPTPTLIGM KKTLVFYKGR 180 APRGEKTNWV MHEYRLEISK QPASGPSTAI PKLPPLMHPS RRSVWFAKSS IRTLESRRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-41 | 68 | 196 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-41 | 68 | 196 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-41 | 68 | 196 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-41 | 68 | 196 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swm_B | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swm_C | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swm_D | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swp_A | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swp_B | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swp_C | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
3swp_D | 8e-41 | 68 | 196 | 18 | 145 | NAC domain-containing protein 19 |
4dul_A | 6e-41 | 68 | 196 | 15 | 142 | NAC domain-containing protein 19 |
4dul_B | 6e-41 | 68 | 196 | 15 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179085.1 | 2e-89 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 1e-65 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A453L064 | 7e-89 | A0A453L064_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_59AFA4B01.1 | 1e-178 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 5e-68 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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