PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_56E52A2FC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 14572.7 Da PI: 11.1499 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C++sF++ L H +H Traes_5BL_56E52A2FC.1 43 FMCKTCHRSFPTFQALGGHRTSH 65 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F L H+r+H Traes_5BL_56E52A2FC.1 93 HQCHVCGQGFEMGQALGGHMRRH 115 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.66 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.89E-6 | 43 | 115 | No hit | No description |
Pfam | PF13912 | 2.4E-10 | 44 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-9 | 93 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MTKHQRAPAD QLVSLSLSLS LGAVADRNTK RTRRAAAAAG GEFMCKTCHR SFPTFQALGG 60 HRTSHLRGRN GLALALAGTG PEPRKATEQK QGHQCHVCGQ GFEMGQALGG HMRRHREQEV 120 AAAVAQAPPV LLELFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU878778 | 1e-171 | EU878778.1 Hordeum vulgare subsp. vulgare Adf2 (Rpg4), RGA1, NBS-LRR-S/TPK stem rust resistance protein (Rpg5), and ADF3 genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149186.1 | 1e-70 | zinc finger protein ZAT8-like | ||||
TrEMBL | A0A3B6LWC8 | 5e-93 | A0A3B6LWC8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UTW1 | 5e-93 | A0A446UTW1_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_56E52A2FC.1 | 8e-94 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-18 | C2H2 family protein |
Publications ? help Back to Top | |||
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