PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_50B986FF5.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 278aa MW: 29052.6 Da PI: 7.5297

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_50B986FF5.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	169	214	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n+r r R +r+ +++ L++l+ + +K + a++L +A YI+ L Traes_5BL_50B986FF5.1 169 TSNKRPRARKERLGERILALQQLVSPF-----GKTDTASVLHEALGYIRFL 214 679*********************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.57	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-12	167	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.12E-5	169	219	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-7	170	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-4	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MVKEEEVMAE AGGRGYLDML GLGEEAMADY FLCLSPSTSS HLSSAAVSTT TTSASTHAVA 60 SPTCASYLQP PPAAPCHQVL SFGGRAEQQY HGGDVFGFQY YYYGGAHAVP VAVPQKSSPT 120 TDCSSSISSM SSSPTATAAS AISTSKPQPA KKRGSRGSSD PRKAAPAATS NKRPRARKER 180 LGERILALQQ LVSPFGKTDT ASVLHEALGY IRFLHDQVQV LSSPYMQRLP PSSAPPAPLP 240 EEAVVEPGDL RSRGLCLVPV SCIDHVAGGS GNGADVWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375126	0.0	AK375126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085P12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194103.1	1e-144	transcription factor bHLH113-like
Refseq	XP_020194104.1	1e-144	transcription factor bHLH113-like
Swissprot	Q9LT67	3e-33	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A3B6LTT5	0.0	A0A3B6LTT5_WHEAT; Uncharacterized protein
STRING	Traes_5BL_50B986FF5.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8082	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	5e-33	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]