PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4E60DC151.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 186aa    MW: 19723.1 Da    PI: 8.401
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4E60DC151.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.48.3e-12731125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+ Cr +L+YP GApsV+Ca+C ++
  Traes_5BL_4E60DC151.1  7 CHRCRRVLAYPSGAPSVCCAMCRAI 31
                           **********************986 PP
2zf-LSD139.68.3e-134872125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           CggCrtlL+Y+r+A  VRC++C tV
  Traes_5BL_4E60DC151.1 48 CGGCRTLLMYTRNADTVRCSCCSTV 72
                           ***********************99 PP
3zf-LSD144.82e-1486109124
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                            Cg Crt+L+YP GApsV+Ca+Cd 
  Traes_5BL_4E60DC151.1  86 CGRCRTTLMYPHGAPSVKCAICDY 109
                            **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.5E-10434IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-9731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-144575IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-104872IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-1283111IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-1486110IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MQSQIVCHRC RRVLAYPSGA PSVCCAMCRA ITAVPPPAPA VEMAQLICGG CRTLLMYTRN  60
ADTVRCSCCS TVNLVRPVNN IAHVNCGRCR TTLMYPHGAP SVKCAICDYI TNITNTGINT  120
MPPAPCPRPT SNESAYNASS ASVVCPQTCI PTPQPQNVTV VVENPMTVDE KGKLVSNVVV  180
GITPGK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0096200.0BT009620.1 Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196161.11e-117protein LOL3-like isoform X1
SwissprotQ6ASS25e-97LOL3_ORYSJ; Protein LOL3
TrEMBLA0A453LR651e-124A0A453LR65_AEGTS; Uncharacterized protein
STRINGTraes_5BL_4E60DC151.11e-130(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-44LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]