PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_4CA71C036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 27285.3 Da PI: 8.0598 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+++fs+ g+ly +ss Traes_5BL_4CA71C036.1 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | K-box | 87 | 3.8e-29 | 84 | 173 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++++ + e+ Lk+++e Lq++qR+llGedL +Ls eL qLe+q+ k l++iRs+K+++ll+++ +l++ke+ l+++n++L++k Traes_5BL_4CA71C036.1 84 TRDEMQNNYLEYMELKARVEVLQHSQRNLLGEDLAPLSTTELDQLESQVGKTLRQIRSRKTQVLLDEMCDLKRKEQILEDANMTLKRK 171 56789**********************************************************************************9 PP K-box 98 le 99 l Traes_5BL_4CA71C036.1 172 LG 173 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.824 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-40 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-30 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.9E-27 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.452 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS 60 SNMLKTLERY QRYIFASQDA AVPTRDEMQN NYLEYMELKA RVEVLQHSQR NLLGEDLAPL 120 STTELDQLES QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LEDANMTLKR KLGEIELEAT 180 PDPPQQQQQM WQGDRGVPPH TPPQPEHFFQ ALECYPSLQP VFRGMDVNQP PPAWMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 5e-21 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-21 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-21 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-21 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN661618 | 0.0 | JN661618.1 Triticum monococcum panicle phytomer 2-like protein (PAP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200413.1 | 1e-165 | MADS-box transcription factor 34-like | ||||
Swissprot | Q6Q9H6 | 1e-116 | MAD34_ORYSJ; MADS-box transcription factor 34 | ||||
TrEMBL | A0A3B6LTD8 | 1e-175 | A0A3B6LTD8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UML1 | 1e-175 | A0A446UML1_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_4CA71C036.1 | 1e-175 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13618 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 6e-74 | MIKC_MADS family protein |