PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4A3874701.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 355aa    MW: 37049.3 Da    PI: 6.6698
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4A3874701.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-18172226256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Traes_5BL_4A3874701.1 172 RKKLRLSKEQAAFLEESFKEHSTLNPRQKVALAKQLNLRPRQVEVWFQNRRARTK 226
                            788899***********************************************98 PP
2HD-ZIP_I/II127.46.2e-41172262192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr
  Traes_5BL_4A3874701.1 172 RKKLRLSKEQAAFLEESFKEHSTLNPRQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR 259
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eelk 92 
                             +lk
  Traes_5BL_4A3874701.1 260 -ALK 262
                            .555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-18155226IPR009057Homeodomain-like
SuperFamilySSF466892.18E-18160229IPR009057Homeodomain-like
PROSITE profilePS5007117.119168228IPR001356Homeobox domain
SMARTSM003891.9E-15170232IPR001356Homeobox domain
CDDcd000866.45E-17172229No hitNo description
PfamPF000461.5E-15172226IPR001356Homeobox domain
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
PfamPF021831.3E-10228262IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24228271IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGVGPGARR EEEGRRGQDV VAAVDRRGLA LGCGSSPEPT  60
MRLTLLPMVP SLGFPWPSES RHLEASTRGF DVNQAPSSGG SAWGACTAGA AAEEEQEDTA  120
AAARAAVSSS PNDSGGSFPM DFSAQGDRGA SDAAPGAGGS RGSDEDDGGS ARKKLRLSKE  180
QAAFLEESFK EHSTLNPRQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC  240
CETLTEENRR LQKELAELRA LKTVHPFYMH LPATTLSMCP SCERVASNSA PGTAAAPSPA  300
PASAAPAPAS GAGIGAAAAP EQHRPSSFAA LFSSARSFPL ASSQPQAPLP APSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220228RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-169BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-169KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148543.11e-174homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-139HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A3B6LN470.0A0A3B6LN47_WHEAT; Uncharacterized protein
STRINGTraes_5BL_4A3874701.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-68homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]