PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_486D0D865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 35799.6 Da PI: 9.5348 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v ++G ++W++I++ ++ gR++k+c++rw + Traes_5BL_486D0D865.1 17 KGPWSPEEDDALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 62 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 71 | 113 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed+ +++a++++G++ W+tIar + gRt++ +k++w++ Traes_5BL_486D0D865.1 71 PFTPDEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 113 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.716 | 12 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.07E-31 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 16 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.29E-15 | 19 | 61 | No hit | No description |
SMART | SM00717 | 7.2E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.747 | 69 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.6E-14 | 71 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.14E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAACRGGGGG KDVDRIKGPW SPEEDDALQR LVGRHGARNW SLISKSIPGR SGKSCRLRWC 60 NQLSPQVEHR PFTPDEDDTI LRAHARFGNK WATIARLLSG RTDNAIKNHW NSTLKRKYSS 120 SSSASASPAE DGAAMADDED RRPLKRTSSD GYPGLCFSPG SPSGSDLSDS SHQSLPSVMP 180 SAASQQPHVY RPVARAGGVV VLPTATPQPP QPSPPSPPPP PPPPATSLSL SLSLPGLDAP 240 EPAPVAQPMS MPPPPAPVQP AAAPQMPPPP PMPFQLQPPP QPQPRTAAPF NGEFLSMMQE 300 MIRIEVRNYM SGFDPRSPAD GVHAAKRMMS MAKIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-38 | 14 | 117 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355241 | 0.0 | AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146152.1 | 1e-173 | transcription factor MYB44-like | ||||
TrEMBL | A0A3B6LKC5 | 0.0 | A0A3B6LKC5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_486D0D865.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 3e-66 | myb domain protein 70 |
Publications ? help Back to Top | |||
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