PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_456C3408A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 222aa    MW: 24367.4 Da    PI: 10.194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_456C3408A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.76.8e-34161371128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            lppGfrFhPtd el+ +yL++ + +++l++  vi+ v+   + +PwdLp +  +e ++ yfFs+r+    +g r++rat  gyWkatg
  Traes_5BL_456C3408A.1  16 LPPGFRFHPTDVELLLQYLRRMALDRPLPA-AVIPVVHAAAMpDPWDLPGA--SEGESAYFFSQRQG---RGGRRRRATG-GYWKATG 96 
                            79***************************9.899999666555******43..466889****9976...5889999977.******* PP

                    NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            k+k+v+++    k+ lvg+k+ L+f++g++    +tdWvmheyrl
  Traes_5BL_456C3408A.1  97 KEKPVFVQlpvgKRLLVGVKTALAFHRGKS----RTDWVMHEYRL 137
                            *******999977778**********6544....79*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4110164IPR003441NAC domain
PROSITE profilePS5100540.78816164IPR003441NAC domain
PfamPF023651.3E-2317137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEKMRAAGEA PPTQQLPPGF RFHPTDVELL LQYLRRMALD RPLPAAVIPV VHAAAMPDPW  60
DLPGASEGES AYFFSQRQGR GGRRRRATGG YWKATGKEKP VFVQLPVGKR LLVGVKTALA  120
FHRGKSRTDW VMHEYRLAGA ADQNKRANGG SQSSEWVVCR VSMKSRARRS AAGGETTGDH  180
QQEQPSPSPS STSSCVTDHT CHAPDQEEVS SSTSHCQQHP TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2941653169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689130.0AK368913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2082C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168455.11e-133NAC domain-containing protein 41-like
TrEMBLA0A3B6LNF91e-163A0A3B6LNF9_WHEAT; Uncharacterized protein
STRINGTraes_5BL_456C3408A.11e-164(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-32NAC domain containing protein 47
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]