PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_3EEBE3D51.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20330.6 Da PI: 9.7752 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 72.1 | 1.1e-22 | 4 | 97 | 1 | 86 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee...redamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C+++p++ +++q++++ +++k++G++ +l+ll+a+ +++ r+++++sl+yeA+ r+ + vyG+vg++++ Traes_5BL_3EEBE3D51.1 4 SCNGCRVLRNGCSDGCTIRPCLewirsADAQANATVFLAKFYGRAGLLNLLAAAGPDDagvRPALFRSLLYEACGRMVNRVYGSVGLLWS 93 6*********************9999667889**********************55443579**************************** PP DUF260 83 lqqq 86 +q+ Traes_5BL_3EEBE3D51.1 94 GQRG 97 9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.271 | 3 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-18 | 4 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MRMSCNGCRV LRNGCSDGCT IRPCLEWIRS ADAQANATVF LAKFYGRAGL LNLLAAAGPD 60 DAGVRPALFR SLLYEACGRM VNRVYGSVGL LWSGQRGPAR PPSRALVEAV LKGCPVVRVT 120 SDAPLTACDI RHVAKVGPAA SPEAAAAGTL LGVSRTRAHH VQARVSRLSL WIQSKNEKQF 180 ELDWVEKIC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171256.1 | 9e-80 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 9e-55 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A446U152 | 1e-134 | A0A446U152_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_3EEBE3D51.1 | 1e-135 | (Triticum aestivum) | ||||
STRING | Traes_5BS_3EEBE3D51.1 | 1e-135 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 2e-46 | LOB domain-containing protein 40 |
Publications ? help Back to Top | |||
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