PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_3BA7EA9A3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 24189.5 Da PI: 8.6212 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.6 | 3.8e-30 | 36 | 167 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksg 81 +G+ FhPt++el+ ++L++k+ ++ ++ + +i++ +i++++P++Lp v+++ + yfF++++++y+tgkrk+r + + Traes_5BL_3BA7EA9A3.1 36 AGLGFHPTEQELL-DHLRAKLMDDGINSHPligefitTIQDEdGICHTHPENLP-GVTKDGSAKYFFHRTSNAYTTGKRKRRqIQGEL 121 799**********.99*****99995443244455445887757**********.556677899******************445577 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +W++tgk +v++ +g+++g kk +v+y+ r+++ e+ +Wvmh++++ Traes_5BL_3BA7EA9A3.1 122 TWHQTGKGCPVTV-DGRVMGYKKFMVLYNWRQHRRESDKWVMHQFHI 167 8************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.554 | 34 | 185 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.02E-30 | 35 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-14 | 36 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MIFENFIQLA EGTCGAAKEE SYAFLKSLWD NRMPMAGLGF HPTEQELLDH LRAKLMDDGI 60 NSHPLIGEFI TTIQDEDGIC HTHPENLPGV TKDGSAKYFF HRTSNAYTTG KRKRRQIQGE 120 LTWHQTGKGC PVTVDGRVMG YKKFMVLYNW RQHRRESDKW VMHQFHIGER WDEEGELVVS 180 KIFCHPAKEK EKARSSARRS TRETMVRY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020398103.1 | 1e-54 | NAC domain-containing protein 75 isoform X4 | ||||
Refseq | XP_020691134.1 | 3e-55 | NAC domain-containing protein 75 | ||||
Swissprot | O49459 | 8e-54 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
Swissprot | Q9M0F8 | 7e-52 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A060A5N8 | 5e-54 | A0A060A5N8_BOENI; NAC domain-containing protein (Fragment) | ||||
TrEMBL | M0UD69 | 2e-53 | M0UD69_MUSAM; Uncharacterized protein | ||||
STRING | Traes_5BL_3BA7EA9A3.1 | 1e-157 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 4e-56 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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