PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_39FD9626E.5
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 282aa    MW: 31338.2 Da    PI: 6.2455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_39FD9626E.5genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08113157554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  Traes_5BL_39FD9626E.5 113 HMMRERQRREKLSQSYADLYAMVSSR-----SKQDKNSIVQSAAVYIHEL 157
                            889**********************8.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.966108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-12108176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.12E-8112162No hitNo description
Gene3DG3DSA:4.10.280.108.7E-10112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6113157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQMDSYYFHD DAHLFAGCGV PGSPDLPFAD LIASLSEPLP AVVESQSAFR EYRGVGLELP  60
GTARGGTGNG INIHRRMMGV LGRMGPAAEE EERPQHQQQQ AAGAVESSRG FRHMMRERQR  120
REKLSQSYAD LYAMVSSRSK QDKNSIVQSA AVYIHELKVA KEQLQRRNDE LKAKILGHDE  180
QQQCVKVQFE VDEPSSSVDS MIGALTRLKS MNVKTRGIHS ILSGQRLTTE MNVETTIAAC  240
EVEKAVEEAL QEVERNQLPD SEAPFPGSRS AWPQTSHVQN VF
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659030.0AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179775.10.0transcription factor BHLH148 isoform X2
SwissprotQ75KV91e-118BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A3B6LT050.0A0A3B6LT05_WHEAT; Uncharacterized protein
STRINGTraes_5BL_39FD9626E.50.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-27bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]