PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_38DFDFE41.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28902.8 Da PI: 9.2506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.2e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+ Traes_5BL_38DFDFE41.1 14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGT 100 579***************************.89***************8888999********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Traes_5BL_38DFDFE41.1 101 DRPIYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 ******956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-58 | 10 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.046 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-26 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDERSDMDKL EEALLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KLASSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLTDPSLP KVPIDKNIPA NDAWAICRIF KKPSSMAQRA 180 LSHSWGPQST ATIEPDLLSA LQSIQASHFA FESSPCSAEV AIPVSRLNSQ HYFHEQQQQK 240 PNSSQNGSSY PPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-55 | 13 | 175 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-55 | 13 | 175 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-55 | 13 | 175 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-55 | 13 | 175 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-55 | 13 | 175 | 19 | 171 | NAC domain-containing protein 19 |
4dul_A | 6e-55 | 13 | 175 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 6e-55 | 13 | 175 | 16 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184786.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-101 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A453KYM9 | 0.0 | A0A453KYM9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_38DFDFE41.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-104 | NAC family protein |
Publications ? help Back to Top | |||
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