PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_2DDBAA0C2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 404aa MW: 41949.4 Da PI: 9.8036 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 69 | 179 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssss 69 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk++eWL+++a +ai+el+++ + Traes_5BL_2DDBAA0C2.1 69 SGGKDRHSKVYTSKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAVEWLINAASAAIDELPSLdpaafanmpadhqaapragkQ--- 153 689*************************************************************655555333332222222220... PP TCP 70 aseceaesssssasnsssgkaaksaakskksqksaasalnlak 112 +++ + + + +s+ s++s+ s l+l++ Traes_5BL_2DDBAA0C2.1 154 ----------------QQP-QGSRSLCSSTSETSKGSELSLSR 179 ................222.11111122233333332333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-34 | 70 | 192 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.381 | 71 | 129 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MESADAAGGA PGGGAPPGRG SSAKRMRGVI GSGGGDGMEL VPWGSPPQPG QQPPQLQGSA 60 SRICRVRASG GKDRHSKVYT SKGIRDRRVR LSVPTAIQFY DLQDRLGFDQ PSKAVEWLIN 120 AASAAIDELP SLDPAAFANM PADHQAAPRA GKQQQPQGSR SLCSSTSETS KGSELSLSRS 180 DGRVGGGSSL DKEVTVASNP SAQAGSFTEL LTGAGAASAI ATAAPRRQSW QQQQQQPVSA 240 VTADRVGIAH PGKGSGAQVV PTYPGFRFGN APPFGMQPAQ PFNFGPSAQN QMTQFSLVQG 300 GLAAAPAPAQ AGDYSLDFSM NSGYMGATRG ALQSNSPHFS SHQQQQQQQR QLQDLDDGPS 360 PPFLYANAAA TAPHLASENH LTATAAMQLW NGLQHAGMKE KSKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-24 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-24 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358289 | 0.0 | AK358289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072N07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147324.1 | 0.0 | transcription factor PCF6-like | ||||
Swissprot | Q10CE8 | 3e-99 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A3B6LT39 | 0.0 | A0A3B6LT39_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_2DDBAA0C2.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-35 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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