PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_2131D2B17.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 381aa MW: 42970.5 Da PI: 6.931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 7.9e-52 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk ++++e++wyf+++rd+ky+++ r+nr+t++g+Wkatg+d Traes_5BL_2131D2B17.1 17 MPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGETDWYFYCPRDRKYRNSARPNRVTAAGFWKATGTD 103 69***************************.89***************88888999********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl Traes_5BL_2131D2B17.1 104 RPIYSSeGTRCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 143 *****856667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.2 | 16 | 174 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-56 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MEGINDVNMD KSDEIIMPGF RFHPTDEELV SFYLKKKIQQ KPISIELIRQ LDIYKFDPWD 60 LPKLASTGET DWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSSE GTRCIGLKKS 120 LVFYRGRAAR GIKTDWMMHE FRLPSLTDPS LPKRPIDKNI PLNDSWTICK IFKKTSSMAQ 180 QMALSHTWGP PLPGTTEQDL FSAMQPVQAS HFASESSSRS LHVAEAPASQ FNSKHGFQGQ 240 QQLQKPSNTQ DGSSCKVISF NCNPSLELEG PTILPFQTQP SQKPEHTAPP LFNMQFGQPE 300 QQITGFLADS SADVNAGMSC RNQESSTMKH GNTFSMNNEL EAPGKLTFPF DLGADSSDDW 360 KCNMPWESFL SPTVPAEMPQ Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 18 | 177 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 18 | 177 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 18 | 177 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 18 | 177 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199016.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-94 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A3B6LRR9 | 0.0 | A0A3B6LRR9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_2131D2B17.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 3e-95 | NAC domain containing protein 94 |
Publications ? help Back to Top | |||
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