PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_1E751EF1F.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 1455aa MW: 163856 Da PI: 7.1812

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_1E751EF1F.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	410.4	1.6e-125	1083	1454	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL++cA+av+++d +++ ++ +l +++s +g+p+qRl y++e+L +rla+s++++ykal+ ++ + e++++++ ++ Traes_5BL_1E751EF1F.1 1083 LKKLLMSCARAVDEKDSLAIDMTVPELGKNVSVSGKPLQRLGEYMVEGLVTRLASSGHSIYKALKWQKPN---GCEVISYQRELYA 1165 5799***********************************************************99998...9******** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 v+P+lkf+++ aN aI eav ge+++HiiDf isqG+QW++L+qaLa+Rp+gpp++RiT ++++es + le +g+ L+++A+ Traes_5BL_1E751EF1F.1 1166 VCPYLKFGYVSANGAIAEAVRGEDMIHIIDFRISQGVQWISLIQALAARPGGPPTVRITCIDDSESAyaRGGGLEILGNTLSDIAR 1251 ***********************************************************998899999********** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 e+ +pfef++l +++++e +L v pgEa+aVn+ l lh+++desvs +++rd++L+lvk+lsPkvv++veqe+++n+++F++r Traes_5BL_1E751EF1F.1 1252 EFALPFEFHAL-DISVSEVEEGHLGVIPGEAVAVNFNLTLHQIPDESVSAANHRDRILRLVKRLSPKVVTIVEQELNTNTGPFMQR 1336 ******6.6689****************************************************************** PP GRAS 257 flealeyysalfdsl..eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 f+e+l+yy+a+f+s+ e + pr+ +er+k+E+ +l+r+ivn+vacegaer+erhe ++kW++ l++aGF+p pl++++ ++ ++l Traes_5BL_1E751EF1F.1 1337 FAETLDYYTAIFESIdvERERPRKPKERTKMEQYCLARKIVNIVACEGAERVERHEVFGKWKAHLMMAGFRPSPLGSQVKDNLRTL 1422 ***********5556677788********************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l+ ++s+ y++ e +g l+lgWk+rpLv+ SaW Traes_5BL_1E751EF1F.1 1423 LQYYSSN-YKLAEGDGVLYLGWKNRPLVVSSAW 1454 977.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.80.10.10	8.3E-12	251	267	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52540	3.04E-50	327	583	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.2E-52	330	609	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	1.6E-16	333	488	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	2.3E-9	348	363	No hit	No description
PRINTS	PR00364	2.3E-9	420	434	No hit	No description
PRINTS	PR00364	2.3E-9	517	531	No hit	No description
SuperFamily	SSF52058	1.04E-19	648	1023	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	8.3E-12	682	994	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS50985	63.677	1057	1436	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-123	1083	1454	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 1455 aa Download sequence Send to blast
METGTNLWAL KKKGEEWRSA LQERGAEHTS FLAGEHSGQV TSLVDLADLE EGLTDRSIYD 60 SRFSSTSFPT EGEVVGQHRS VFFDSTKGSW KCRHCDWTHQ LISPCRNGDF PNYQRCGQIT 120 MEPPFGMGSL LGKLGMLLAP QGCRLPRRVK DRMHLLKADV EDLSAYLAEM AEAEELPLTA 180 KRWMKEAREL AYDIEDNMDM CVRPAIKTTR FICKIGRVKI PKRLFSKRVL PRGLKQIAYT 240 AQVPAEHGGK TRSVCKAIHV VITCFPRRLR WYKHIMELIS DFRMYIQEAI ERHERYELHC 300 CSTFRRRFVS MGRMLPTPYG GIADMVIDGR VSEFIDSLDN DRDQQLKVVS VLGPGCLGKT 360 ALAQVLYNKF AGRFDCTAFI RVSKRPDVVR LFREMLTQVQ GQQPTEDSKE LDLASSIREH 420 LQDKRYLIIM DDIWAASAWD IISDAFPDGN RGSRVITTTQ IEEVALTCCC YQSEYIFEIK 480 PLDHDHSKKL FFNRLCGSES DCPEELKEVT NKIVELCGGL PLATISIASL LSSQPVIKMD 540 LLMYLCDSLN SYLWTSPSEG TRQVLNLSYS NLPDCLKICL LRLNMYPEGH TIWKDDVVKQ 600 WVAEGFIHTT EGQDMEKVAA SYFDELIKRR FIQPLCVKYN NEVLSCTIHD VVHDLIADKC 660 SEENFNVVID SSRKNVALSH KVRRLSLLFG DAKYAKTPEN IRSQVRSLTF YGLFESIPSI 720 SEFKLLRVLN LQLSGYGGSD TVNLTGISDL FQLRYLKIAS DICIQLPEHM LGLQCLETLV 780 MDSEATAVPW DIIHLPSLSH LSLLVMTNLL HWLGSMRFVG KLNNLRDLHL TFSVPSSDYL 840 KRSMEALGSL LSGHGNLKTL ALVNGPCHRN AMVRDASKVT VSWDGLVPPP LLEVFDWSLR 900 SCILPRLPKW IGKLGELRIL KIAARELARD GIDALRGLPA LTDLSLYLQT AAIERIVFDK 960 GGFSVLNYFK LRCSVPCLKF EANSMPNLQK LKLGFNAPRP RIDQHGASTA ISIGHLPGLR 1020 EIYAKIRGAC ADAESALATA ISNHPSNPLI SVQLVDYTFD DDEITHDKNE QDEVVEEDRG 1080 GYLKKLLMSC ARAVDEKDSL AIDMTVPELG KNVSVSGKPL QRLGEYMVEG LVTRLASSGH 1140 SIYKALKWQK PNGCEVISYQ RELYAVCPYL KFGYVSANGA IAEAVRGEDM IHIIDFRISQ 1200 GVQWISLIQA LAARPGGPPT VRITCIDDSE SAYARGGGLE ILGNTLSDIA REFALPFEFH 1260 ALDISVSEVE EGHLGVIPGE AVAVNFNLTL HQIPDESVSA ANHRDRILRL VKRLSPKVVT 1320 IVEQELNTNT GPFMQRFAET LDYYTAIFES IDVERERPRK PKERTKMEQY CLARKIVNIV 1380 ACEGAERVER HEVFGKWKAH LMMAGFRPSP LGSQVKDNLR TLLQYYSSNY KLAEGDGVLY 1440 LGWKNRPLVV SSAWH

Sequence ? help Back to Top

Protein Sequence Length: 1455 aa Download sequence Send to blast

METGTNLWAL KKKGEEWRSA LQERGAEHTS FLAGEHSGQV TSLVDLADLE EGLTDRSIYD  60
SRFSSTSFPT EGEVVGQHRS VFFDSTKGSW KCRHCDWTHQ LISPCRNGDF PNYQRCGQIT  120
MEPPFGMGSL LGKLGMLLAP QGCRLPRRVK DRMHLLKADV EDLSAYLAEM AEAEELPLTA  180
KRWMKEAREL AYDIEDNMDM CVRPAIKTTR FICKIGRVKI PKRLFSKRVL PRGLKQIAYT  240
AQVPAEHGGK TRSVCKAIHV VITCFPRRLR WYKHIMELIS DFRMYIQEAI ERHERYELHC  300
CSTFRRRFVS MGRMLPTPYG GIADMVIDGR VSEFIDSLDN DRDQQLKVVS VLGPGCLGKT  360
ALAQVLYNKF AGRFDCTAFI RVSKRPDVVR LFREMLTQVQ GQQPTEDSKE LDLASSIREH  420
LQDKRYLIIM DDIWAASAWD IISDAFPDGN RGSRVITTTQ IEEVALTCCC YQSEYIFEIK  480
PLDHDHSKKL FFNRLCGSES DCPEELKEVT NKIVELCGGL PLATISIASL LSSQPVIKMD  540
LLMYLCDSLN SYLWTSPSEG TRQVLNLSYS NLPDCLKICL LRLNMYPEGH TIWKDDVVKQ  600
WVAEGFIHTT EGQDMEKVAA SYFDELIKRR FIQPLCVKYN NEVLSCTIHD VVHDLIADKC  660
SEENFNVVID SSRKNVALSH KVRRLSLLFG DAKYAKTPEN IRSQVRSLTF YGLFESIPSI  720
SEFKLLRVLN LQLSGYGGSD TVNLTGISDL FQLRYLKIAS DICIQLPEHM LGLQCLETLV  780
MDSEATAVPW DIIHLPSLSH LSLLVMTNLL HWLGSMRFVG KLNNLRDLHL TFSVPSSDYL  840
KRSMEALGSL LSGHGNLKTL ALVNGPCHRN AMVRDASKVT VSWDGLVPPP LLEVFDWSLR  900
SCILPRLPKW IGKLGELRIL KIAARELARD GIDALRGLPA LTDLSLYLQT AAIERIVFDK  960
GGFSVLNYFK LRCSVPCLKF EANSMPNLQK LKLGFNAPRP RIDQHGASTA ISIGHLPGLR  1020
EIYAKIRGAC ADAESALATA ISNHPSNPLI SVQLVDYTFD DDEITHDKNE QDEVVEEDRG  1080
GYLKKLLMSC ARAVDEKDSL AIDMTVPELG KNVSVSGKPL QRLGEYMVEG LVTRLASSGH  1140
SIYKALKWQK PNGCEVISYQ RELYAVCPYL KFGYVSANGA IAEAVRGEDM IHIIDFRISQ  1200
GVQWISLIQA LAARPGGPPT VRITCIDDSE SAYARGGGLE ILGNTLSDIA REFALPFEFH  1260
ALDISVSEVE EGHLGVIPGE AVAVNFNLTL HQIPDESVSA ANHRDRILRL VKRLSPKVVT  1320
IVEQELNTNT GPFMQRFAET LDYYTAIFES IDVERERPRK PKERTKMEQY CLARKIVNIV  1380
ACEGAERVER HEVFGKWKAH LMMAGFRPSP LGSQVKDNLR TLLQYYSSNY KLAEGDGVLY  1440
LGWKNRPLVV SSAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-56	1087	1455	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155316.1	0.0	putative disease resistance RPP13-like protein 2
TrEMBL	A0A3B6LR49	0.0	A0A3B6LR49_WHEAT; Uncharacterized protein
STRING	Traes_5BL_1E751EF1F.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8320	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-145	scarecrow-like 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]