PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_1783B924B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 1043aa MW: 117601 Da PI: 6.5203

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_1783B924B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.5e-24	269	355	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA ++GF+vrk s+k+ n+ +++r +vCskeg+r ++ ++ + +++raetrtgC+a+++vk +++gk++vt+++ +HnH+ Traes_5BL_1783B924B.1 269 EFYVSYAGTAGFNVRKGCSEKT-ANNVTKSRAYVCSKEGFRPKSFTA--EPKKQRAETRTGCEAHMTVKITTSGKYVVTECVADHNHD 353 6***************9999.66669*********999877..9999********************************9 PP FAR1 89 la 90 l Traes_5BL_1783B924B.1 354 LE 355 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-21	269	355	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.6E-24	455	549	IPR018289	MULE transposase domain
Pfam	PF04434	7.2E-6	723	767	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.076	723	770	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-7	745	772	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence Send to blast
MIMQRFLCCR GNYSYRKGNK AKDSDPAKEV EDGAAGGGEG EGKVEAPKKR GRKPGKKSTP 60 VIEVENSVEK GVAIAGAENG QAVPSTKNLG RGGDKKDVAE KDVESVVELE EEHVEVEDAA 120 QDGAHDLGDG DDAGSDAGEG VMEKEVEVKE KRGRGRPRKA VTEGNALQAC VSTDLGVTAS 180 QCAVDERKKI LNKYLSKRQS RPASGRPAKP LERRSKRLEK QNLQNEKKPE SKEYEIVEAE 240 QDPETEVVAG PGGEPKVGMV FLNEDKAYEF YVSYAGTAGF NVRKGCSEKT ANNVTKSRAY 300 VCSKEGFRPK SFTAEPKKQR AETRTGCEAH MTVKITTSGK YVVTECVADH NHDLEAPVVD 360 IQILRSQKLL AKLQQPPDPP KVVLIPNDYK NYVRTRHTTD MQLGDARAIS EYLQRMKGEN 420 PSFFCSIQVD EDDQFRNVFW ADVKSVMDFN YFGDVVCVDT RYSISDYCRP LLLFIGVNHH 480 KQPTIFGTAF IYDESVESFK WLFETFKSAM SGKQPRTVLT DRSTAISDAV ASAWPGTAHR 540 FSLLHLYQNA TKVLSDTFQG SETFAHDFSR SLYDYEEEGD FLSSWEILLA KYNLKDNEWL 600 SKLYEDRERW ALPYGRDIFC ADIAATLRSD NMDAILTGVL KTEIDLPYFF SRYDKFLEEK 660 RLAEQEADYL GVQMTQRVPP LRLLWQAANT YTPALFELFR LEFELVLACM VYCCGEIGPI 720 SEYEVTVKNR PQVHFVRFDS SEYMVLCSCK KFEFVGLPCC HALKVLEIKN IKELPPQYIL 780 KRWRKDAQSE SPKENFGFAA VGEDPKFTVS KRHNSLYRTL YKVAAKAAEN IEGQRFMESQ 840 YDQLLEQVEL LLQAKLHDKP SLSTIMRSQQ PNLPQNDTSN SEPRRASSKK NKNVENRRQQ 900 QSPLESSKKK KGRQGLVEPE EAELPLRVLA PTISNDIPNH MSTPTNQFLA PSHLMQAPYV 960 TQQFGLNSLQ GFSGMSPFGQ MQEQSPVHLQ QPHLQQPPFH SGPQMHQAPP PDIQSLQFLS 1020 SNPQLGHQTT DQGQYTIPVW DFL

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence Send to blast

MIMQRFLCCR GNYSYRKGNK AKDSDPAKEV EDGAAGGGEG EGKVEAPKKR GRKPGKKSTP  60
VIEVENSVEK GVAIAGAENG QAVPSTKNLG RGGDKKDVAE KDVESVVELE EEHVEVEDAA  120
QDGAHDLGDG DDAGSDAGEG VMEKEVEVKE KRGRGRPRKA VTEGNALQAC VSTDLGVTAS  180
QCAVDERKKI LNKYLSKRQS RPASGRPAKP LERRSKRLEK QNLQNEKKPE SKEYEIVEAE  240
QDPETEVVAG PGGEPKVGMV FLNEDKAYEF YVSYAGTAGF NVRKGCSEKT ANNVTKSRAY  300
VCSKEGFRPK SFTAEPKKQR AETRTGCEAH MTVKITTSGK YVVTECVADH NHDLEAPVVD  360
IQILRSQKLL AKLQQPPDPP KVVLIPNDYK NYVRTRHTTD MQLGDARAIS EYLQRMKGEN  420
PSFFCSIQVD EDDQFRNVFW ADVKSVMDFN YFGDVVCVDT RYSISDYCRP LLLFIGVNHH  480
KQPTIFGTAF IYDESVESFK WLFETFKSAM SGKQPRTVLT DRSTAISDAV ASAWPGTAHR  540
FSLLHLYQNA TKVLSDTFQG SETFAHDFSR SLYDYEEEGD FLSSWEILLA KYNLKDNEWL  600
SKLYEDRERW ALPYGRDIFC ADIAATLRSD NMDAILTGVL KTEIDLPYFF SRYDKFLEEK  660
RLAEQEADYL GVQMTQRVPP LRLLWQAANT YTPALFELFR LEFELVLACM VYCCGEIGPI  720
SEYEVTVKNR PQVHFVRFDS SEYMVLCSCK KFEFVGLPCC HALKVLEIKN IKELPPQYIL  780
KRWRKDAQSE SPKENFGFAA VGEDPKFTVS KRHNSLYRTL YKVAAKAAEN IEGQRFMESQ  840
YDQLLEQVEL LLQAKLHDKP SLSTIMRSQQ PNLPQNDTSN SEPRRASSKK NKNVENRRQQ  900
QSPLESSKKK KGRQGLVEPE EAELPLRVLA PTISNDIPNH MSTPTNQFLA PSHLMQAPYV  960
TQQFGLNSLQ GFSGMSPFGQ MQEQSPVHLQ QPHLQQPPFH SGPQMHQAPP PDIQSLQFLS  1020
SNPQLGHQTT DQGQYTIPVW DFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	KRGRGRPRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360042	0.0	AK360042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108P13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187513.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	A0A446UP88	0.0	A0A446UP88_TRITD; Uncharacterized protein
STRING	Traes_5BL_1783B924B.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]