PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_13B5BB344.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 513aa    MW: 55160.2 Da    PI: 8.9277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_13B5BB344.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-066587123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C++C++ F r  nL+ H r+H
  Traes_5BL_13B5BB344.2 65 YVCEICNQGFQRDQNLQMHRRRH 87
                           9*********************9 PP
2zf-C2H211.70.00078144165223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C+ C+k +  +s++k H++t+
  Traes_5BL_13B5BB344.2 144 ACSRCSKAYAVHSDYKAHLKTC 165
                            6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.25E-56487No hitNo description
Gene3DG3DSA:3.30.160.602.1E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976587IPR007087Zinc finger, C2H2
SMARTSM003550.00526587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355110107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001134164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.25E-5138163No hitNo description
SMARTSM00355130143170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MLGSCGPMAG PPTDEETAEP PFGSSLQIAT GSPATKRKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPSCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR  180
KQARAVPGRF DPIQCGTERR MVESFIEHQD TCTAGCPQAG AGVAAPVCGG VAAALSSQQQ  240
APPPAISLSR SRTASSTSPS SDVVISAVTW PGAAAMRRPN AAAFHRFEQQ LPSPRTPPPD  300
GRGGGGHNLE LQLMPPSSSC TGGAAAPLGV APSWYAAPQS PPAPISQGDN AAMQLQLSIG  360
FCSGDNRGRT DVAGPSSGSA ARTMQEAREE LRQAMAEKAA ADEARAQAKR QGELAEQELA  420
SAKRMRHQAQ VELSRAHALR EHAVRQVNAT LLQITCFSCR QKFRAVRPSA AMSSEVACSY  480
VTEGGDVEVD NVDEPLILDG MRRRQQHATM DTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-13139183347Zinc finger protein JACKDAW
5b3h_F1e-13139183347Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
GenBankKU4940200.0KU494020.1 Hordeum vulgare subsp. vulgare broad leaf 1 (BLF1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171982.10.0protein indeterminate-domain 16-like
TrEMBLA0A446UBK20.0A0A446UBK2_TRITD; Uncharacterized protein
STRINGTraes_5BL_13B5BB344.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-101indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]