PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_0C6735099.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 337aa    MW: 37062.3 Da    PI: 7.8214
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_0C6735099.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-3155108255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            prlrWtpeLH++Fv+a+++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  Traes_5BL_0C6735099.1  55 PRLRWTPELHHCFVRAIHRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 108
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2951111IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-3051109IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1552109IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-2354110IPR006447Myb domain, plants
PfamPF002492.4E-956107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEASKGSDGS SGASASNDDS TVEEEGAGRE SHEDVCRGNS LSSSSVRPYV RSKNPRLRWT  60
PELHHCFVRA IHRLGGQDRA TPKLVLQLMN VRGLSIGHVK SHLQMYRSKK IDDSGQVIGH  120
LPLPHAFHHR QSGAGTMSSR FGAAAWPPWR SFHEPYWAHG RPFLGSRTYN SLEAETEAAF  180
LRSRAQHVAR AASSNPGLMM QSGCASLNDH HTMNHQHKRL LQPTVRNDDD THVPLDLDLD  240
LDLSLGLPVP RKEAKWKRSG CSWVKEGPDE NGADEEQVDE ISTATMLSLS LFSPGDAPRM  300
MSSTSASDRA VNVSVDIKRG GKDEHATRRA STLDLTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1756110357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3736460.0AK373646.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3038H19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183942.10.0transcription factor LUX-like
TrEMBLA0A3B6LK020.0A0A3B6LK02_WHEAT; Uncharacterized protein
STRINGTraes_5BL_0C6735099.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-37G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]