PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_0C3609EF0.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26005 Da PI: 4.9605 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.4e-17 | 45 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + grWv+e+r+p ++g +r +lg++ tae Aa+a +aa+++l g Traes_5BL_0C3609EF0.2 45 PVYRGVRRRGNAGRWVCEVRVPGKRG--ARLWLGTYLTAEAAARANDAAMLALGG 97 68*******************95544..**********************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-12 | 45 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-16 | 46 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-25 | 46 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-16 | 46 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.035 | 46 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDMGMDLSSS SPSSSVSSTP EHASGRASPA KRPTGRTKFR ETRHPVYRGV RRRGNAGRWV 60 CEVRVPGKRG ARLWLGTYLT AEAAARANDA AMLALGGRSA RCLNFADSAW LLAVPSALSN 120 LADVRRAALQ AVADFQRREA ANGLIARTVA KEAPSSAPAQ SSSESDSADS SETSEASADG 180 EFEVLATMDI DMFSRLDLFP EMDLGSYYVS LAEALLMDPP STAAIMDAYW DNGDGGADVA 240 LWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY951951 | 0.0 | AY951951.1 Triticum monococcum CRT/DRE binding factor 13 (CBF13) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167750.1 | 1e-135 | dehydration-responsive element-binding protein 1H-like | ||||
Refseq | XP_020179850.1 | 1e-135 | dehydration-responsive element-binding protein 1H-like | ||||
Swissprot | A2Z389 | 2e-65 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A3B6LQW5 | 1e-174 | A0A3B6LQW5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_0C3609EF0.2 | 1e-174 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-30 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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