PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_06A206038.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SRS
Protein Properties Length: 330aa    MW: 33924.4 Da    PI: 8.7474
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_06A206038.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.32e-68972483154
                 DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 
                             g++sCqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpa+krrerqqql+a++++aaa++  a + r+ +++ +++ a+++ +
  Traes_5BL_06A206038.1  97 GGGTSCQDCGNQAKKDCQHQRCRTCCKSRGFACSTHVKSTWVPASKRRERQQQLTALAASAAATTGGAGPSRDLTKRPRARLAATTPT 184
                            5778*********************************************************999988888888888899999999999 PP

                 DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            +ss+++++ + ++++P+evsseavfrcvr++ vd++e+elaYqt+vsigGhvfkGiL+d G+++
  Traes_5BL_06A206038.1 185 TSSGDQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAELAYQTTVSIGGHVFKGILHDVGPSN 248
                            *************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-6499247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.2E-26101143IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.4E-23198246IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAGFPLGTGG SGRDSSASPT GVHPSDASTF LYATRGGGFQ LWGQPQDQQQ LTHPFYAPNL  60
IRFATDDIPA GAAQSLAGAA SSSSSRGARA AALAGTGGGT SCQDCGNQAK KDCQHQRCRT  120
CCKSRGFACS THVKSTWVPA SKRRERQQQL TALAASAAAT TGGAGPSRDL TKRPRARLAA  180
TTPTTSSGDQ QMVTVAERFP REVSSEAVFR CVRLGPVDQA EAELAYQTTV SIGGHVFKGI  240
LHDVGPSNAH AQLQAAAGGS GGGGGDYQFR LTGDVSPPST GAEAGDAGGG NNHNIVVSSA  300
VVMDPYPTPG LYGSFPATTP FFHGHPYQRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412851e-161AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192267.10.0protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD402e-49SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A3B6LQX10.0A0A3B6LQX1_WHEAT; Uncharacterized protein
TrEMBLA0A446UH720.0A0A446UH72_TRITD; Uncharacterized protein
STRINGTraes_5BL_06A206038.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-43Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]