PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_054434680.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 449aa MW: 47975.4 Da PI: 6.6408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.8 | 1.5e-16 | 273 | 319 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Traes_5BL_054434680.2 273 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 319 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-21 | 267 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.165 | 269 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-17 | 272 | 323 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.5E-22 | 273 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-14 | 273 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-17 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPPVVQED 60 EAGLWFPFAL ADSLDKDIFQ DLFCEEPPGA AGVDGSSRQQ SMSLADCGDN AGGFQSDLVQ 120 ARAGKAAMEE GASSTLSAMG ASFCGSNQVQ VQGAVSDHGR AGHATAYGDG GAGSALPSAV 180 GSVNANARGR GHEATVASSS GRSNYSFGVT ATTTTTTGTE PTSTSNRSSK SKRGLDTEDS 240 ESPSEDAESE SLVLERKPPQ KLTTARRSRA AEVHNLSERR RRDRINEKMR ALQELIPHCN 300 KTDKASMLDE AIEYLKTLQM QVQMMWMGSG MAPPAVMFPG MQMHQYLPQM GPSMARMPFM 360 APPQQGHGVS LPEQYAHFLG VNPHHHLQPP AHHHQRQHFA QGLGYYPLGA KALQQSPALH 420 HVSNGNAGGG TPAATANATP GNAIHPNKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 282 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX085422 | 0.0 | KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181205.1 | 0.0 | transcription factor PIF1-like | ||||
TrEMBL | A0A446UL61 | 0.0 | A0A446UL61_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_054434680.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3107 | 36 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-35 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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