PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_04BDEB5D8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 1117aa    MW: 125142 Da    PI: 5.793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_04BDEB5D8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.61.1e-12774711171374
                   GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86  
                             l++++++c +av+++d+ +++ l+++l +l+s +gdpmqRl ay++e+L ar ++s+s+lyk+l+ +e +   sse ++++++++e
  Traes_5BL_04BDEB5D8.2  747 LKQVIIACGKAVAANDMYATELLISELGQLVSVSGDPMQRLGAYMLEGLVARFSSSGSKLYKSLKYKEPT---SSELMSYMHFLYE 829 
                             57899****************************************************************9...999********** PP

                   GRAS   87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 
                             ++P +kf+++ aN aI eav+ge+ vHiiDf+i qG QW +++qaLa Rp+gpp lRiTg+++++s   +   l  +g rL+++ +
  Traes_5BL_04BDEB5D8.2  830 MCPSYKFGYMSANGAIAEAVKGENLVHIIDFQIAQGSQWTTMIQALAVRPGGPPCLRITGIDDSNSAyaQGSGLDMVGTRLHNVSA 915 
                             ***************************************************************9888999**************** PP

                   GRAS  171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 
                             ++gvpfefn+ v+ + +++ l++L+++pgE+++Vn+++qlh+++desvs+e++rd++++++kslsP+vv++veqe+++n+++F+ r
  Traes_5BL_04BDEB5D8.2  916 SCGVPFEFNA-VHAASHEVYLKHLDIRPGEVIVVNFAYQLHHTPDESVSTENHRDRIIRMIKSLSPRVVTLVEQESNTNTAPFFSR 1000
                             **********.688899999****************************************************************** PP

                   GRAS  257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 
                              le+++yy+a+f+s++  lpr+++ r++ E+++lgr+i +++acegaer+erhe +++W++r+ +aGF+p+pls+ +++++k+ll 
  Traes_5BL_04BDEB5D8.2 1001 YLETFDYYTAVFESIDFALPRDDKIRVNTEQHCLGRDIISLIACEGAERVERHEVFGTWKARFAMAGFRPYPLSSMVNSTIKTLLD 1086
                             ************************************************************************************** PP

                   GRAS  343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                              ++s+ yr+ee++g l+lgWk+r Lv+ SaWr
  Traes_5BL_04BDEB5D8.2 1087 DYHSW-YRLEERDGVLYLGWKSRVLVVSSAWR 1117
                             ***99.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561125.6E-6910303IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.9E-221396No hitNo description
SMARTSM002209.8E-3023301IPR000719Protein kinase domain
PfamPF000692.4E-5123301IPR000719Protein kinase domain
PROSITE profilePS5001137.2923307IPR000719Protein kinase domain
PROSITE patternPS0010702952IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.103.1E-44117303No hitNo description
PROSITE patternPS001080158170IPR008271Serine/threonine-protein kinase, active site
PfamPF078871.9E-46401559IPR012416CALMODULIN-BINDING PROTEIN60
PROSITE profilePS5098565.3797211098IPR005202Transcription factor GRAS
PfamPF035143.7E-1257471117IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006950Biological Processresponse to stress
GO:0004672Molecular Functionprotein kinase activity
GO:0005516Molecular Functioncalmodulin binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MDDAGSESTA VPLDLLLQIT DGFSEERKLG SGSFGEVYLG VHPDGQKIAV KKIYDMPGVD  60
EEQFQNEFKN LARLQHRNIV RLVGYCHHIQ EVPAMYEGKL VLAEKIHRAL CLEYMSNGSL  120
EKYISDECDK YDWHTGYGII KGICQGLKYL HTKLEPPIYH LDLKPANILL DENMVPRIAD  180
FGISRLFGDE RTRATKSTLG TQGYLPPEYI RNYLISSKFD IFSLGVVIIK IMAGRAGYYK  240
SAEMSSHEFI NVVQENWTNR PHETSSLMKA YSKQVKICIE IGLSCVQEDR HKRPTVQNIV  300
DRLNETETEC TCAYKKFEVQ ENSGGLTPNY FMNNGRSVSE VPLNNDAGPS IQARTAWQYP  360
TDMTAQQELG ERQAASLPNG IYEPPRQIME GFPESGGTTT VERQDLAVRV QEAITDPFVV  420
KDCRSALNGK SYPPSKEEAV HRLESVSLKG KRCNDLADKN ITTVKRFMGH YHRDKSGLQK  480
EEDWSTTVTH ATTCDPGVEI YSYGVAEENC ELLFTFFYDL VGVLTNGDYV PASDLDQFQQ  540
LKVKSWKLPA FKKFEEREKL GVLIPDYLMM NGCPVRAVSL NNDAGPSVQA RTTWQYPNDM  600
AAQHVFGDRH PLNGFSRATV LSNNDAGPSN QGTLPFSQPM YEQTVHQGNG QHDPSMAQNG  660
IPYYLPQGNI LNDQGSLSAQ PTPFHNFLPV PADEMITGAS LTDEQTKYFS TTDSLGTLEN  720
VIPGPELDIP LKQGNWRQLL GINTGDLKQV IIACGKAVAA NDMYATELLI SELGQLVSVS  780
GDPMQRLGAY MLEGLVARFS SSGSKLYKSL KYKEPTSSEL MSYMHFLYEM CPSYKFGYMS  840
ANGAIAEAVK GENLVHIIDF QIAQGSQWTT MIQALAVRPG GPPCLRITGI DDSNSAYAQG  900
SGLDMVGTRL HNVSASCGVP FEFNAVHAAS HEVYLKHLDI RPGEVIVVNF AYQLHHTPDE  960
SVSTENHRDR IIRMIKSLSP RVVTLVEQES NTNTAPFFSR YLETFDYYTA VFESIDFALP  1020
RDDKIRVNTE QHCLGRDIIS LIACEGAERV ERHEVFGTWK ARFAMAGFRP YPLSSMVNST  1080
IKTLLDDYHS WYRLEERDGV LYLGWKSRVL VVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-5774411171375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525670.0AK252567.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f06, mRNA sequence.
GenBankAK3609130.0AK360913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128D13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6LU200.0A0A3B6LU20_WHEAT; Uncharacterized protein
TrEMBLA0A446UPD30.0A0A446UPD3_TRITD; Uncharacterized protein
STRINGTraes_5BL_04BDEB5D8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-172GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]