PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AS_E5FD82E36.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 306aa MW: 33526.3 Da PI: 9.4532

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AS_E5FD82E36.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	13	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhP+d+el+++yL++kv+gk ++ + + +vd++kvePwdLp +++ + kewyf+s +d+kyatg+r+nrat sgyWkat Traes_5AS_E5FD82E36.2 13 LPPGFRFHPRDDELICDYLAPKVTGKVgFSGRRPpMVDVDLNKVEPWDLPVTASVGGKEWYFYSLKDRKYATGQRTNRATVSGYWKAT 100 79**********************986665656***********8888899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkd+ v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyrle Traes_5AS_E5FD82E36.2 101 GKDRVVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRLE 142 9999.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	2	162	IPR003441	NAC domain
PROSITE profile	PS51005	55.21	13	162	IPR003441	NAC domain
Pfam	PF02365	1.2E-26	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSMSFLSMVE TELPPGFRFH PRDDELICDY LAPKVTGKVG FSGRRPPMVD VDLNKVEPWD 60 LPVTASVGGK EWYFYSLKDR KYATGQRTNR ATVSGYWKAT GKDRVVARRG ALVGMRKTLV 120 FYQGRAPKGR KTEWVMHEYR LEGAHEQASK QEDWVLCRVI CKKKSGVGAT PRPRNLSNIV 180 HGTPTDTSSP PLPPLMDTTL AQLQATMNTS AAAAAAALEQ VPCFSSFSNN SASNSSYLPM 240 VTGNSNGMGY MDHGLPDFGS YLDPAMNCDK KVLKAVLSQL SSMGGEVVPS MSPQMAAAVS 300 STWNHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	8	165	12	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	8	165	12	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	8	165	12	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	8	165	12	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	8	165	15	171	NAC domain-containing protein 19
3swm_B	2e-49	8	165	15	171	NAC domain-containing protein 19
3swm_C	2e-49	8	165	15	171	NAC domain-containing protein 19
3swm_D	2e-49	8	165	15	171	NAC domain-containing protein 19
3swp_A	2e-49	8	165	15	171	NAC domain-containing protein 19
3swp_B	2e-49	8	165	15	171	NAC domain-containing protein 19
3swp_C	2e-49	8	165	15	171	NAC domain-containing protein 19
3swp_D	2e-49	8	165	15	171	NAC domain-containing protein 19
3ulx_A	2e-49	9	163	11	169	Stress-induced transcription factor NAC1
4dul_A	2e-49	8	165	12	168	NAC domain-containing protein 19
4dul_B	2e-49	8	165	12	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ650113	0.0	HQ650113.1 Triticum aestivum NAC transcription factor 6A (NAC6A) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198650.1	0.0	NAC domain-containing protein 21/22-like isoform X1
Swissprot	Q84TE6	1e-87	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A3B6KBG3	0.0	A0A3B6KBG3_WHEAT; Uncharacterized protein
TrEMBL	A0A446SPG1	0.0	A0A446SPG1_TRITD; Uncharacterized protein
STRING	Traes_5AS_E5FD82E36.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10022	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	6e-79	NAC domain containing protein 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]