PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_D9A4C1AB0.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23798.5 Da PI: 6.8798 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.6e-18 | 23 | 66 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Traes_5AS_D9A4C1AB0.2 23 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 66 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.102 | 1 | 17 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.6E-22 | 3 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-11 | 3 | 29 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.86 | 18 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 22 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 23 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-11 | 25 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-20 | 30 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
GLKRTGKSCR LRWLNYLRPD VKRGNFTADE QLLILDLHSR WGNRWSKIAQ HLPGRTDNEI 60 KNYWRTRVQK HAKQLNCDAN STKFKDAMKY LWMPRLADHH LQQASTVGDH LVPGPPTAYM 120 ESSGMVTSSS DSFASESYDG ARCANASVGE MIHSGDWVQE QNQGFWPETN QNFQLQDSEL 180 SGWVQGFSES DSLAENFWSL EDIWKMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 4 | 70 | 40 | 106 | B-MYB |
1gv2_A | 2e-17 | 4 | 70 | 37 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-17 | 4 | 70 | 37 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-17 | 4 | 70 | 37 | 103 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360551 | 0.0 | AK360551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120I18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162380.1 | 1e-141 | myb-related protein 340-like | ||||
Swissprot | Q2QZJ8 | 3e-81 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A1D5YTG3 | 1e-154 | A0A1D5YTG3_WHEAT; MYB transcription factor 79 | ||||
TrEMBL | A0A446SSE0 | 1e-154 | A0A446SSE0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446SSN2 | 1e-155 | A0A446SSN2_TRITD; Uncharacterized protein | ||||
TrEMBL | M8AKK0 | 1e-155 | M8AKK0_TRIUA; Transcription factor MYB21 | ||||
STRING | TRIUR3_32110-P1 | 1e-155 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 4e-56 | myb domain protein 112 |
Publications ? help Back to Top | |||
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