PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_D0F590190.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 767aa    MW: 88710.3 Da    PI: 7.8076
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_D0F590190.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1621.8e-19132213291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            fY++YA  +GF  ++++++++      +k++  C+++gk+++ ++  +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l
  Traes_5AS_D0F590190.1 132 FYSTYALLTGFVAKRNSNYRR------KKYHIECNRSGKSTPARNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPL 211
                            9****************9999......5789***********9998.9**********************.9***************9 PP

                   FAR1  90 ap 91 
                            +p
  Traes_5AS_D0F590190.1 212 SP 213
                            86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-17132213IPR004330FAR1 DNA binding domain
PfamPF105512.6E-21353437IPR018289MULE transposase domain
PROSITE profilePS509668.493636672IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MSSASELSKE PVGKQSMTEE RPQPTGDSYE ELSSDSIEKN TDGILADEAD KETNSVDHSL  60
QQAKEQNQLH DNVENNEMVN RNPSESDSDS SSGSDSDSEL GKYFYPKFEE LEAARKPEPG  120
MKFQTLEDAN GFYSTYALLT GFVAKRNSNY RRKKYHIECN RSGKSTPARN PNRKRKINSF  180
ERTNCQAKVI VKLTKGQWEF ATVRNEHNHP LSPNPSLARF FLSQKHMSSE EKSFLKVLQQ  240
SKIPPNKILR IFRRMRSSFG NISFKKQDPV SSVRSSSENI PSKKKDPISL QCTEQRKTEN  300
SDVESALKHF KELELRNPSF FYIKQTDEDN IVRSIFWTDA RSRMDYDIFG DFISVDTTYT  360
TNRHNLPVAT IIGINNHGRT LLLGCALLRD GKAETFKWMF QTLLQVMGGK ISGSIITNQD  420
EPLGRAIAEV LPQVRLRFWK CDVMGKAHER IAAFMAARGN IKLELDSLVD NSLTEMEFEE  480
GWSSLIERYD ASKNEYLQFM WRIRKIWAPV YFRQDFYPFA ESLGRSEGMN IVLFRNYVLP  540
KDRIEKFIER YEEIQKTTLK TDDEDRRQAG TLPSCFSLQP IEKHASTIYT RQIFLKVQRE  600
LLHSTAFDVH VVKKGSVYRL ERVFNYENPE FDRNAFEVFV DPVSNTFICQ CAKFARDRLL  660
CCHIFRLFTQ LGINEIPAQY IVPRWTDKFK EEKAKQYTEK CLEKADSTAR YEMLMSKMAD  720
LSKKICSDGT KCNTFMLEFD SIQEKLLATE GENPRNNDNC MEIITTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188688.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLT1MYH50.0T1MYH5_TRIUA; Uncharacterized protein
STRINGTraes_5AS_D0F590190.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-72FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]