PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_BDDD76A8B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 9515.97 Da PI: 10.4484 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6.1e-17 | 6 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l +v+q+G++ W+++a++m+ + R +k+c +rw +yl Traes_5AS_BDDD76A8B.1 6 RQRWRPEEDAILRSYVRQYGPREWNLVAQRMNvpLDRDAKSCLERWKNYL 55 89***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.015 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-13 | 5 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-23 | 7 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-16 | 8 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.80E-9 | 8 | 55 | No hit | No description |
Pfam | PF13921 | 2.2E-15 | 9 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MEMKERQRWR PEEDAILRSY VRQYGPREWN LVAQRMNVPL DRDAKSCLER WKNYLRPGIK 60 KGSLTDDEQR LVIRLQAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB443456 | 1e-128 | AB443456.1 Triticum aestivum WRS2 mRNA for Myb transcription factor, complete cds. | |||
GenBank | JF951902 | 1e-128 | JF951902.1 Triticum aestivum clone TaMYB18 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182147.1 | 2e-48 | protein rough sheath 2 | ||||
Swissprot | Q9S7B2 | 1e-43 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | A0A287QL50 | 9e-49 | A0A287QL50_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QLR6 | 2e-48 | A0A287QLR6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A453JX53 | 2e-48 | A0A453JX53_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5AS_BDDD76A8B.1 | 3e-50 | (Triticum aestivum) | ||||
STRING | Traes_5DS_8F3BD4450.2 | 4e-48 | (Triticum aestivum) | ||||
STRING | TRIUR3_13997-P1 | 1e-48 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 3e-41 | MYB family protein |
Publications ? help Back to Top | |||
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