PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AS_B310AA218.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 197aa MW: 20846.4 Da PI: 8.6559

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AS_B310AA218.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.3	5e-13	25	49	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGApsV+Ca+C++V Traes_5AS_B310AA218.1 25 CHGCRSVLLYPRGAPSVCCAVCHAV 49 ************************9 PP
2	zf-LSD1	42.4	1.1e-13	64	88	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV Traes_5AS_B310AA218.1 64 CVGCRTLLMYTRNATTVRCSCCDTV 88 ************************9 PP
3	zf-LSD1	48.8	1.2e-15	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ Traes_5AS_B310AA218.1 105 CGQCQTVLMYPYGASSVKCAICNFI 129 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.8E-12	22	50	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-10	25	49	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.3E-13	61	90	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-10	64	88	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.8E-12	102	131	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.1E-14	105	129	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MKNYLLLRPD RPGRDFAGMQ SQIVCHGCRS VLLYPRGAPS VCCAVCHAVT SAPPPGMEMA 60 QLICVGCRTL LMYTRNATTV RCSCCDTVNL ARPAPPVNSI AHVNCGQCQT VLMYPYGASS 120 VKCAICNFIT NIGMNTVRPL PPTMHAPNGI SYSVPSTSAP SAQSQNVTVV VENPMTVDDK 180 GKLVSNVVVG VTSGGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX135580	0.0	JX135580.1 Triticum aestivum cultivar Suwon11 LOL2 (LOL2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198652.1	1e-125	protein LOL2-like
Swissprot	Q2QMB3	2e-99	LOL2_ORYSJ; Protein LOL2
TrEMBL	A0A3B6KCJ1	1e-140	A0A3B6KCJ1_WHEAT; Uncharacterized protein
TrEMBL	A0A446SPM2	1e-140	A0A446SPM2_TRITD; Uncharacterized protein
STRING	Traes_5AS_B310AA218.1	1e-141	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	9e-55	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]