PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_710247B67.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 195aa MW: 22768.2 Da PI: 6.9484 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 166.3 | 2.4e-51 | 2 | 189 | 187 | 374 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 e+l+ e+L+++p+E+l+Vn+ +q ++l+desv les+rd vLk +++++P+ ++++ + + +++ F++rf e l yysalfd l+++ Traes_5AS_710247B67.1 2 ESLRKEDLKIDPDEVLIVNSLFQFKNLMDESVVLESPRDVVLKNIRKMRPHTFIHAIVNGSFSAPFFVTRFREVLFYYSALFDVLDTT 89 678999********************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 pr++e+r+ +E+ +lgr++ nv+aceg++r+er et+++W+ r ++aG+k +pl+ ++ + a+ +++++ + + ++ ++++l++gW Traes_5AS_710247B67.1 90 TPRDNEQRMLIEQNILGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKLLPLNPEVIELARDKVKNCYHKDFVIDIDQHWLLQGW 177 ***********************************************************************889************** PP GRAS 363 kdrpLvsvSaWr 374 k+r L+++S W+ Traes_5AS_710247B67.1 178 KGRILYAISTWT 189 ***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.831 | 1 | 169 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-49 | 2 | 189 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MESLRKEDLK IDPDEVLIVN SLFQFKNLMD ESVVLESPRD VVLKNIRKMR PHTFIHAIVN 60 GSFSAPFFVT RFREVLFYYS ALFDVLDTTT PRDNEQRMLI EQNILGRAAL NVIACEGTDR 120 VERPETYKQW QVRNQRAGLK LLPLNPEVIE LARDKVKNCY HKDFVIDIDQ HWLLQGWKGR 180 ILYAISTWTA NDASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 4e-15 | 8 | 153 | 234 | 381 | Protein SHORT-ROOT |
5b3h_E | 4e-15 | 8 | 153 | 234 | 381 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357996 | 0.0 | AK357996.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066L11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160240.1 | 1e-138 | scarecrow-like protein 34 | ||||
Swissprot | P0C884 | 3e-74 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | A0A446SRT6 | 1e-138 | A0A446SRT6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446SS03 | 1e-140 | A0A446SS03_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TXV4 | 1e-138 | A0A446TXV4_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TXW3 | 1e-140 | A0A446TXW3_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TXX4 | 1e-139 | A0A446TXX4_TRITD; Uncharacterized protein | ||||
STRING | EMT25175 | 1e-139 | (Aegilops tauschii) | ||||
STRING | Traes_5AS_710247B67.1 | 1e-144 | (Triticum aestivum) | ||||
STRING | Traes_5BS_ED54C58C5.1 | 1e-138 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22289 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 1e-76 | GRAS family protein |
Publications ? help Back to Top | |||
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