PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_4B8974198.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 28405.6 Da PI: 4.8717 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.9 | 3e-22 | 127 | 247 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtra 56 Yn+Y+ ++GFs+++++s+k ++ge +k++fvC+k k++ ++ ++k+r++ + Traes_5AS_4B8974198.2 127 YNAYSLQMGFSIKMNSSRKDLKTGELIKQQFVCNKFRKPDVDDGGaekipvlddiveqekndnedeaivfldddskgkkRSKKRKRDK 214 ***********************************999999888899******************************98889999999 PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 +tgCkak+ vk dg+wev+ +++eHnH+l+ Traes_5AS_4B8974198.2 215 IVQTGCKAKMIVKVI-DGRWEVIYFVSEHNHPLV 247 ***************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-20 | 127 | 247 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MIDLNEVPAE NNDDPLYCTQ HGSGNAEFVA ESPNPPIIQR VDGAATEAME ADGKSSHGGR 60 APGSTQVPAA IATGDAHTLD GTGAAGDTGG TVGNGLGAEN DDEAWSQPKE PYVGMRFDTL 120 EDAKVHYNAY SLQMGFSIKM NSSRKDLKTG ELIKQQFVCN KFRKPDVDDG GAEKIPVLDD 180 IVEQEKNDNE DEAIVFLDDD SKGKKRSKKR KRDKIVQTGC KAKMIVKVID GRWEVIYFVS 240 EHNHPLVDKP CLTKYLQSHQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194049.1 | 7e-64 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446PCM9 | 1e-151 | A0A446PCM9_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AS_4B8974198.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-11 | FAR1 family protein |
Publications ? help Back to Top | |||
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